Aocu003331.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- -
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000021.1:2654263-2660553[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-10 1e-07 31.9 0.0 3 37 17 51 15 57 0.93 2 2 4.9 1.3e+03 -0.5 0.0 22 30 142 150 128 151 0.74
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTATGAAAGAAGGACACTACGAGCATCATGGAGTGCGGACGACTTAGACAAAGCCATGCGTAGTGTCCAAAGCAAAGTAATGGGTGTTAATGAGGCATCCAGAAACTTTGGCATACCGTCTCGAACTCTAAGAAGACACATTTTATCAGGAAAATCAAAGGGCCCTCTGGGACGCAAACCAGTATTTTCTGTAGAATATGAAAAAAAACTGGTTGCCCATATAAAGAAATTGGAAAAAGTTGGATTTGCCCCTGACAGAAAAGATGTAAAAGAAATGGCATTTCAACTAGCTAAGAAACTTAATATTAAAAACCCATTTTCAGCAAGTTCAGAATCAGCTGGAAATGTATGGTTTTCGGGGTTCATGGCTCGCAACTCAGAATTAAGCCAAAGAAAATCAGAAGGCTTGTCACTTGCTCGAGCTTATGGAGTTAATAGAAAAGATGTACAGGATTTTTTTGATTTACTAGCCAAAATCTACGAAGAAAATGATTTTGCAAATCACCCCGAAGATATTTTCAACATGGACGAGTCCGGAATACAGGTGAACAACAAGCCAGGAAGAGTAATTGCCACAAAGGGAGCCAAAGATGTCTACACGCTCACTAGCTCTGAAAAGGGTGAAAACGTAACGGTAATTGCTTGTTGTAATGCTCAAGGTAACTTCCTTCCCCCTGTTTTAATCTATAAGGGTACTTACAGCAAACCACAATTTTCCGAAGGTCTTCCCCCAGGATCACAGGTTTTCATGAACAAAAAGTCTTCTTATATAAATACAGATCTCTTTATGCAATGGTTTGAAGAAGTGTTTCTGCGTCACAAGAGTCCTCGAAAAACATTGTTAATATTAGATGGTCACAGCTCGCACAGTAACAATATTCGCCTACTGGAAGTGGCTAAAGAAAATGATGTTATTCTTTTGTGTCTACCAAGTCACACTACGCATGCTCTGCAGCCTCTTGATAGAGCCTTTTTTAGACCATTGAAGGTGTACTTTGCCCAGGAAGCGAAGACATGGATGGTCAGGAACAAAGAGAAAAAGTTGACACGCTATGACGTATCTAAGTTAATCGGACGAGCTTGGGGCAAAGCTGCCACTGTTTCCAACGGTGTGTCAGCTTTAAAATCGTGTGGAATTTATCCTTTTGATCCGAGTGCCATTCCTGATCACTACTTTTCACTATCTGATTCGTTGCGAGACCAAAATTTAGTTGTTGAAGATGAAGATGAGACGTCAAGAGAGTCTCTGTCATTACTTCATGAATATGACGATAGTGAACTAATTGCCTTTGATACAATCCATTCATCACCGCCGCAGGTCGTAAATGATTTAGAGCCCAGGACATTATCACCACCTGTCGTTGTGACTGAGTTCCAACCTGAGCCAGGTCCTTCAGGACTACATCTAACTAATACAAATTACGAAGATAGTTTGATGGAAGTCGTAACTGAACATGCATTGCCTGTGCAAGATGCACTTGTGGCAGAAGAGCTTGATCAAATTAATCTCATATCGCCAAAAACACCACAAAAGTATCCGGTACAATGTCGTATCGAGAGTGAGGTGGGTCTGACTATTGCGAAATCTAATCTTATTGATTTGATTGAACAAACCCCTGAAAAGCAAATAGGATCTATTGAGTCAGAAGCAACACCATCCAAAGTTTTGAATGAAATCCATCCAGTGCCTAAACTTCCAGTAGTATTGTCTAAGAGAAAACAAACAGCTGTTATTTTAACTTCTGATGAAAATATAGAGAAACGGAAAGTAATTGCTGATAAAAAGAAACCAGCAGCTGGAAAATTAAAGCAGGCTAAGACCACAAAAAGAATTAAAGCAGTGAAAGAAAAAGATGGTGTAAAAAAGAAACAAAATGGGGGTATAAAGAAGCAAAAGAAAGATGAACTACCTGGTACACATAGCGATGCAAAAGCATTCGTAAATGGAACAGAATTAAAATTGATCCCGCTGCTGCAAAATACTGGTAAGGTCTACTTTGACCCTGAGCTCCGCGCCGCTATATGCGCCGCCGTCAGCGACAACGTGGAGTACAGTGCCAGCGCCGATGAACCCGCACGCGCTGTGGTTCTGTCTACAGTTTCGTAG
- Protein Sequence
- MSRKYERRTLRASWSADDLDKAMRSVQSKVMGVNEASRNFGIPSRTLRRHILSGKSKGPLGRKPVFSVEYEKKLVAHIKKLEKVGFAPDRKDVKEMAFQLAKKLNIKNPFSASSESAGNVWFSGFMARNSELSQRKSEGLSLARAYGVNRKDVQDFFDLLAKIYEENDFANHPEDIFNMDESGIQVNNKPGRVIATKGAKDVYTLTSSEKGENVTVIACCNAQGNFLPPVLIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMQWFEEVFLRHKSPRKTLLILDGHSSHSNNIRLLEVAKENDVILLCLPSHTTHALQPLDRAFFRPLKVYFAQEAKTWMVRNKEKKLTRYDVSKLIGRAWGKAATVSNGVSALKSCGIYPFDPSAIPDHYFSLSDSLRDQNLVVEDEDETSRESLSLLHEYDDSELIAFDTIHSSPPQVVNDLEPRTLSPPVVVTEFQPEPGPSGLHLTNTNYEDSLMEVVTEHALPVQDALVAEELDQINLISPKTPQKYPVQCRIESEVGLTIAKSNLIDLIEQTPEKQIGSIESEATPSKVLNEIHPVPKLPVVLSKRKQTAVILTSDENIEKRKVIADKKKPAAGKLKQAKTTKRIKAVKEKDGVKKKQNGGIKKQKKDELPGTHSDAKAFVNGTELKLIPLLQNTGKVYFDPELRAAICAAVSDNVEYSASADEPARAVVLSTVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906049;
- 90% Identity
- iTF_01439841;
- 80% Identity
- -