Asol021271.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720675.1:198165747-198171824[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.001 91 6.5 0.1 20 44 136 160 118 166 0.83 2 5 0.023 2e+03 2.2 0.1 24 44 168 188 163 191 0.86 3 5 5.3e-05 4.6 10.6 0.3 21 46 193 218 189 220 0.91 4 5 0.00051 45 7.4 0.1 21 47 221 247 218 252 0.83 5 5 1.4e-06 0.13 15.6 0.0 20 46 248 274 247 278 0.90
Sequence Information
- Coding Sequence
- ATGAATTCTGAGGAAGTGTTTGTGCAACCAGagCCTCCAGAATTATTAGAAGAAAGTTTTACTCTATCACCATACATCAAAGTAACAGACTTAAAAATGAATGATAATATGATGATTTTAAATGGTGTAGTGTACGAAGAAGTTACAGATGAATCTGTATTATGTGTTCCAGTGTCTGATACATTGTTTGACTGCAATATTGATTCAGGATTAGCAGAACAGCAAATTGATGGTTTTCTAAATGAACATAATTACCATACTCACAGCGATGATGATATAAGTAATATGAATATgttttttgcaaattttgttaataataagACAAATTCAAAGATATTGGAATGCACACTTTGTCAAAAGATAATGAAAACACCTGGAGCATTTTATAGACATATACGTACACATACTGGTGAAAAACCTTTTCAATGTGAATTATGTCATAAAAAGTTTTCACAGCAAAGTAATTTGTGGAAACATGTACTTATACATACTGGAGAAAGACGATTTAAATGCCCTTCATGCAATAAGAAGTTTTCACAAAGGGCTAATATGCAAAAGCATATGGTTACACATACTGGAGAAAGACCTTTTACATGTTATATATGTTCACGAACATTTTCTCAAAGAgctaatttaaataaacatattcgGATTCATACAGgAGAGAAGCCTTACACATGTAAATTTTGTAATCGTCAATTCGCTCAGCAGTCCAATATGCAGAAACATGAATTGCTACATCAAGGAATAAAACCATTTACTTGCACTGTATGTAATGCGGCGTTTACTCAACAGAGTAACTTAAAGAAGCATGTGGAAACGCATTCGACGGTCAACAGACTGAATAAAATTTACTATTGTGAGAAATGCAATAAAAGATATAGTACATCAAATAGTTTATATAAACACATACTGAAATGTGAATAA
- Protein Sequence
- MNSEEVFVQPEPPELLEESFTLSPYIKVTDLKMNDNMMILNGVVYEEVTDESVLCVPVSDTLFDCNIDSGLAEQQIDGFLNEHNYHTHSDDDISNMNMFFANFVNNKTNSKILECTLCQKIMKTPGAFYRHIRTHTGEKPFQCELCHKKFSQQSNLWKHVLIHTGERRFKCPSCNKKFSQRANMQKHMVTHTGERPFTCYICSRTFSQRANLNKHIRIHTGEKPYTCKFCNRQFAQQSNMQKHELLHQGIKPFTCTVCNAAFTQQSNLKKHVETHSTVNRLNKIYYCEKCNKRYSTSNSLYKHILKCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00070644;
- 90% Identity
- iTF_00070644;
- 80% Identity
- iTF_00070644;