Asol097957.2
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- salm
- Assembly
- GCA_963170755.1
- Location
- OY720679.1:134465505-134487182[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.8 2.9e+03 2.2 0.1 3 19 2 18 1 20 0.89 2 10 9.8e-06 0.0032 21.0 0.9 1 23 316 338 316 338 0.98 3 10 1.3e-05 0.0044 20.5 1.9 1 23 344 366 344 366 0.98 4 10 0.12 40 8.1 3.8 2 23 678 699 677 699 0.98 5 10 8.5e-08 2.8e-05 27.4 0.6 1 23 705 727 705 727 0.97 6 10 0.00012 0.039 17.6 2.6 1 23 737 759 737 759 0.98 7 10 0.15 50 7.8 4.5 2 23 1024 1045 1023 1045 0.97 8 10 0.097 32 8.4 0.6 1 13 1051 1063 1051 1065 0.92 9 10 2.7e-06 0.00089 22.7 4.0 3 23 1285 1305 1283 1305 0.96 10 10 3.9e-07 0.00013 25.4 0.9 1 23 1311 1333 1311 1333 0.98
Sequence Information
- Coding Sequence
- ATGTGTCCGCGATGTCAAGAGCAGTTCACCGTTGTCCAAGAGTTCCTAACGCACAAGGCCGAGTGCACCTTAAAAGCCAAAAAACACGACGAACCGGCCCACTCCGATCCGGAAGACATGGTCGTTTCTGAAGATGACGACGACGAGGATGACGAAACGGGCGGTAAACGATTAGAAAGGATGCGCAGACACCATCAGGACGCGGCGAATAACAACAGCGTCGACGAGGGCACGCCCGAAGACGAAGGCGGTCCGAGAATAGGATTTCCGTTTCCTCTGCCGCCACCCACGGGGCACGTCACCTTGGAAGCGCTTCAAAACACTAAAGTTGCTGTGGCGCAATTTGTGGCAACCACCATGGCGAATAATGCCGAGAATGAGGCCGCCTTCAAGGAGCTGGCAGTATTACAATCGACCTTATTCACGCTCCAACACCAGCAAGTTCTTCAGCTGCAACTGATTAATCAGTTACAGCAGCAGCTGTCGATAAACAGATCGAAAGCCAGCAGTCCGGCATCGTTAACGAACGAAAATGATGCCGAACCACCGCCCGTGGAATCCCCACCGCCTTCGCAAGTGGCATCTAGGGAACCTACTCCTGCGTTACTTCCGGCCCCACCAGTTTGTCCGCCCATCACGGAACAACCGCCTGTGCCAGAACCGTGCCCAGAAATTAGTGTTCCTATGTCATTGCCACCTCAGATACAACCTCCATTATGTTCCATATCATCCTCGCTCGCATCTAGCATTATAACACACAACAACGAACCACCATCTCTAGATGAACCGAATACTTTGGAGATGTTGCAGAAACGCGCTCAAGAAGTGTTGGATAACGCCAGCCAGGGACTGTTAGCGACCAATTTGGCCGACGAATTGGCTTTTAGAAAAGGAAAATCTCCCTCGCCCTACGATTCCAAAGGCCGTAATGAGCCGTTCTTCAAGCACAGATGTCGATACTGTGGTAAAGTGTTCGGTTCTGATTCTGCACTTCAAATACATATCCGATCGCATACGGGCGAACGACCATACAAATGTAACGTTTGCGGTAGTAGATTCACTACGAAAGGTAATCTCAAAGTACATTTTCAACGGCACAGCTCCAAATTTCCCCATATCAAAATGAATCCCAATCCAGTGCCGGAACATTTGGATAAGTATCACCCTCCTCTATTAGCGCAGCTCGGCCAGCAACCCGCATTATCACCGAGTGGTCCGCCACATCCTCCACATCTGGGATTTCCTTCCAGTCACTCTTTTCCTCCCACGACGATACCATTGTACCGTCCACCCGGACCGCCACCCGATTTAATGAACAACAGACTGCAACCCTCGCCTCATCGACCTCCAGAACCAAGCAGATTATTCCCATCCCATCAGCTGTTCATGAAGAGGGAGGAGCAAGATCTGCCCGAGAATTTAACAAAACCAATCAGATCTCCCACACCACCGCAGGAGACGTCGAGTATGGTGGAAAATGAAGAAATGAAAGAGGAAGGGCCGACGGAAGATCTTAAAAATCAAATACCGGAAATCACGCCGAAACAGGAAATCGATACGGATAACGAGCAACAAGAAGTGGAACCAGAACGATTTTCCTCCCCCGGTCCATATCAAGACGAATCGAGTATAGATAGCAGTAAATTTAGTAACGAGGATATGTTAGGTCAAAGGAGTCCGGGCATGGAAAGACCGGAGAATATACAAGACGAACCTGAGAATTTATCACAGAAATGTAATACTTTAACTGGACCTTTAAACGTGATAACTGGTCAAAGGTTACCAGCGAATTTTCCTTTTGGACATGCGTCCTCACCTCCTAGCAGTACATCTTCGGGTAGCTTAGGTCCATTTCCAAATGCGCCACTGACAGATCCAGCAAGAGATCCGGCGATATACACTAATTTATTACCGCGACCTGGTAGTAACGATAACTCATGGGAAAGTCTAATAGAAGTGACCAAAACATCAGAGACGAGTAAACTTCAGCAATTAGTGGATAATATCGAACACAAACTATCGGATCCAAATCAGTGTGTCATATGTCATCGGGTTTTATCATGCAAAAGCGCGTTACAAATGCATTATCGGACACACACCGGTGAACGGCCCTTCAAGTGCAAAATATGCGGACGAGCATTCACCACGAAGGGCAATTTAAAAACACATATGGGTGTTCACAGGGCCAAACCTCCGATGCGTGTGCTGCATCAGTGCCCCGTATGTCACAAGAAATTCACGAACGCTTTGGTCCTCCAACAACATATCCGTTTGCATACCGGTGAACCCACGGATCTCACCCCGGAGCAGATACAAGCGGCGGAAGTGAAAGATTTCCCTTCACCCGGAGCATTCCCACAGATCAATTCCATGAATCCATTCCTTAGTCAAAACTTCCACGTTCCCGGATTGTCGCCGCTGGGACCCGGCGGATTCCCTCTTCATATGAAGTTCGATATGGACAGCAGGGACGTCAAATCCGAGCAAGACTACATGGATGACGATGATGATGACGACGATGACATGAGCGCTTCGGATAATATGATTTCTTTTTCGACATCTCCGCCGGAACAGCATCACAATATGGTCAACACAACCGTGTCGCAGTTATCGGCGTCCGGTTTGAGTTGTTCCGCTGAGGATTTATGCCACGTCAGCAGGAATATACCTTCGATGTCCCCTATGCAGAATGGTGAGAAATCACCGACACAATCCGGCGTGACCAGTCCGGGAAGTTCTGAAATCCGATCGTCACCCAATCAAATATCAACAACCGTCCAGGTACCACGCCCTCCATCTTCCCAGCGAGTCGGCAGTCCCGCACCATCAGAATCAAATTCTCTAGGAGCCTTAGATTTGACACCGAAGATGTCGCAACCGCCCATATCAAGTCCCGGACCTAGTCCAGGGCCCCCAACATTATTTTCATCATTCGGCCTTCTTCCTCCGGGTCAAGGAAGTTCTCCATTGATGACTTCCGCATTATCTTCTTTGACTTCCTCGGTGCTAACGTCAACAAGTTTTAGTCCATTACGATTAGCTGTAGGACCAGCAGTTAGGGGCAACACCACATGCAATCTCTGTTTCAAGACGTTCGCCTGCCATTCAGCCCTAGAAATCCACTACAGGAGTCACACGAAGGAAAGGCCCTTCAAATGTACCGTTTGCGACAGGGGATTCTCCACCAAGGCAGGTGAAGACTGCGTATGCGGTCAGAGGCGTATCCAGGACGCAGGGGAACGTAAAAGAAAGCAGCCGCAACGCAAGAAAATTCCCCCCTCGGTTTTTCCATTGCCAATGAGCCCTGGATACGCCACTGCCTCCTCACATTGGAGTCCGCTCGCGGGCAACATGAAACAACACATGCTCACGCATAAAATCAGAGATATGCCGCAGCACATGTTCGATAAACCCATCGGTGAGGAGCCTCTGAATCCGACACAATCACAACCACCACAACAACAGCAACCACCGCCACCACCACCACCATCGCAACAACAGCAACAGCAGCCACCACAGATACAGCAACAACTACCACAACAACCACCACCGCAGCAATTAGTGCTGCAACCTCAACCACCGCCTCAACATCCCCCGCCACCTTTATTACAACAACCTTTAACACCCCAGCTgcaacaacaacaacagcaacAACAGCAGCAGCAGCCACCACATCCTCCGAAAGATCAAATCAAAAACGAGCAACCGGAGTTGCCCCATCAACCTCACCATCCGCAAGTTCAAATCCATCAGTTGTCAGATAATCCTGGTGAACCTGTGAAAAGAGCACCTACGGAAAATGAACTGCCTCTACCCAAACGACCACCGAGCTTGCAGGCCAGTAAACACTTGTGCCACGTATGCAATAAGAACTTCTCATCCAGCTCGGCCTTGCAGATACACATGCGGACACACACGGGTGATAAGCCATTCCGATGCACCGTTTGTCAGAAGGCGTTCACCACCAAAGGAAACCTCAAGGTACACATGGGAACCCATATGTGGAGCAACGGAGCATCACGGCGAGGGCGACGCATGTCCCTCGATCTGCCACCCATTCCCATGACGCCCAAGGATTCCGAATTTCTGCAACGGAGGCCCGATCTCTTCTACCCGTACCTCCCGGCTCCATTCCTTAACGGTATGCAGCAAAAGCTAAACGAGATCTCAGCGGTTCAAAATCCACAGAACGGGCTAGCGACCGCCGGGGGTAAATACAACCTATTGGGCTTTGGTTATCCGCCCCCGGAAGTGTTGCGCTCCCAGGTCAATTCTCCTGAACGGCCGCCTTCGAGACCCCCGAGTCGAGAACCCGAGCGACTCTGGGATCTGCACTTCGATCGGAAAACGAACAGCGAGCCGCCCAGAGAAGAAATGCTACCACCCAATAGGGAAGGCCTGGCGGCTTGA
- Protein Sequence
- MCPRCQEQFTVVQEFLTHKAECTLKAKKHDEPAHSDPEDMVVSEDDDDEDDETGGKRLERMRRHHQDAANNNSVDEGTPEDEGGPRIGFPFPLPPPTGHVTLEALQNTKVAVAQFVATTMANNAENEAAFKELAVLQSTLFTLQHQQVLQLQLINQLQQQLSINRSKASSPASLTNENDAEPPPVESPPPSQVASREPTPALLPAPPVCPPITEQPPVPEPCPEISVPMSLPPQIQPPLCSISSSLASSIITHNNEPPSLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKGKSPSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSSKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPALSPSGPPHPPHLGFPSSHSFPPTTIPLYRPPGPPPDLMNNRLQPSPHRPPEPSRLFPSHQLFMKREEQDLPENLTKPIRSPTPPQETSSMVENEEMKEEGPTEDLKNQIPEITPKQEIDTDNEQQEVEPERFSSPGPYQDESSIDSSKFSNEDMLGQRSPGMERPENIQDEPENLSQKCNTLTGPLNVITGQRLPANFPFGHASSPPSSTSSGSLGPFPNAPLTDPARDPAIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGAFPQINSMNPFLSQNFHVPGLSPLGPGGFPLHMKFDMDSRDVKSEQDYMDDDDDDDDDMSASDNMISFSTSPPEQHHNMVNTTVSQLSASGLSCSAEDLCHVSRNIPSMSPMQNGEKSPTQSGVTSPGSSEIRSSPNQISTTVQVPRPPSSQRVGSPAPSESNSLGALDLTPKMSQPPISSPGPSPGPPTLFSSFGLLPPGQGSSPLMTSALSSLTSSVLTSTSFSPLRLAVGPAVRGNTTCNLCFKTFACHSALEIHYRSHTKERPFKCTVCDRGFSTKAGEDCVCGQRRIQDAGERKRKQPQRKKIPPSVFPLPMSPGYATASSHWSPLAGNMKQHMLTHKIRDMPQHMFDKPIGEEPLNPTQSQPPQQQQPPPPPPPSQQQQQQPPQIQQQLPQQPPPQQLVLQPQPPPQHPPPPLLQQPLTPQLQQQQQQQQQQQPPHPPKDQIKNEQPELPHQPHHPQVQIHQLSDNPGEPVKRAPTENELPLPKRPPSLQASKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISAVQNPQNGLATAGGKYNLLGFGYPPPEVLRSQVNSPERPPSRPPSREPERLWDLHFDRKTNSEPPREEMLPPNREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121059; iTF_00956518; iTF_01499119; iTF_00308294; iTF_01124003; iTF_01253011;
- 90% Identity
- iTF_00434357;
- 80% Identity
- -