Asol110239.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- Rfx2
- Assembly
- GCA_963170755.1
- Location
- OY720680.1:118111521-118139759[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2 1.8e+05 -3.9 0.1 10 45 116 151 112 153 0.68 2 2 4.7e-38 4.2e-33 117.0 0.0 3 78 256 331 254 332 0.97
Sequence Information
- Coding Sequence
- ATGTCTACAAATAATTTTGATTGGCTTGTTTCAGTGGACAGGTGTAGCCGTGGAGATATAGTCATGGCAACAGCAGCTCGCTTTGCAGCAGATAACAGTCCTCCTACTCCTGCACCAGCATCCACCCCACCAGCTCAGTCACAGACTACCCAACTAATCGTTCTCCCTGCTAGTTTACATCAGACTGCTGCCAATAGTGCTATTGTCAATGCTGTTCCTGTACTAGATGTGTCAGCTCTTGAACAAGCTGCTGATTCAAGTAACGAAAGCTCGGCAACTACTGAACATCCAACTGACAGTCACGAAACAGAAGCCATTGAGCAAACATCTCCTCATTTTATAACAGTTACAgTTGCATCAGAAAACGATACTGTGGCATCCCATCAAGGATATCATGTGCAATATGTTGAACCAGAAGTATATGCATCACAAACAAACGCCAATCAAGCACAAATGGCCTATCCGGTATATACAGTAGGTGATTCTGGCGCTTTATATGCTAGTCAGGGTCAGTACTACGCCGCTCATACTGGTGCAACAGCAGCAGCTAATACCGTGGGATATGCTACACCCGGAGGGCATTATTTAGTACAACAAACAGTAGACGCAGAAACTCTTATAGCTTCGACTAGAAATTCTCCACAGACTACAAATGCTGAAACAAATTTTGTGGCGACAGCCGCAGTGCATGCAACATCGTCTTCTTCTGGCCAAGTAAATGAAGAAATTGGATCAACTCTTGGACATGCAACTAGAGTGTCTCCTGCAACAGTGCAATGGCTCTTAGAAAATTATGAAACGGCAGAAGGAGTATCACTACCTCGTTCTACACTTTATGCCCACTATTTACGACATTGTGCGAACAACAAATTAGAACCAGTTAATGCAGCATCGTTCGGCAAGTTGATTCGATCGGTATTTTTGGGACTCAGGACAAGAAGATTAGGTACAAGGGGTAATTCAAAATACCATTATTATGGCATTAGAGTAAAACCTGGTTCCCCTCTGACAACTATAGAAGATACAAGTCGTAATATATCATCGGGCATATCTGGAAAAGTTTCAGGAAATATGAACAGAGGATTCAAGAGAAATAGCGATAGCTCGGATAATTCAATTTCTGTTGGTGTAATATCACAACATTTATCCTATTTGGGAGATGGCAGTAATGCAATTCCGAATTTTCcaaatataatatttacaagCCCATTACCGAAAGAATGTTCGTATGACGATGTCGATACTTTAAAATCAATATATCGGGAGCATTTAGAAGCCTTCTTAGATGCCATAATGAGTTTAGAATTTGGTACTGTTGAATCGCTATGGAGAGAATTTTGGCGTTCTCAAGACAATAATAACGGCGATGAATGTGAAGAAGAGAAATATTTATCAAAATCAAAATTGTTTGCGTTGTGTACTCTCGAGCCAATTCAGATTTTTATAAGAAACATTGATTTAACATTTTACCAAAACTTGATCCAAGTATTAATTCCAGACGTTTTAAAACCTATACCAGCCACTCTAACGCAGTCTATTCGAAATTTTGCCAAAAGTCTTGAAAATTGGTTGACTACAGCCATGACTGGTGCGCCATCTGGGATGTTATCGGCAAAATTATCTGCTGTATCGGCTTTTAGTTCTAGTTTACGAAGATATACATCATTGAACCACCTTGCCCAAGCAGCAAGAGCTGTGTTGCATAATAGTACGCAAATAGCTCAAATGCTTGCCGACTTAAATCGAGTAGACTTTCATAGTGTCCGTGAACAAGCATCATGGGTGTGCCAATGTGATCATGAAATTGTGGCACGATTTGAGGCAGATTTTAAGTTAACACTGCAACAGCAAAACTCTCTGGAACAATGGGCTTCGTGGTTGAAAAATGTTGTTAAAAGTGCTCTAAAACCATATGAAGGAAAAGCTACCTTTTCAAAAGCAGCAAGGCAATTTCTTTTGAAATGGAGTTTTTACAGTTCAATGGTTATTCGTGATCTGACTTTAAGATCTGCGGCAAGTTTTGGGTCCTTTCATCTCATACGCCTGTTGTATGATGAATATATGTTTTATTTGATTGAGCATCAAGTTGCTGAAGCTACAGGAATTGTACCAATAGCAGTAATGATAGAGGGTATTAAACAAGACACAACTGTGAATAATGTGACTATGTGTGGAAGTGATTTGAATATATGTAATGGTAATTTCAACCAGAGTAACTCCAAATTAGGCTGCATCAGTCCAACGGATCCATCAAAACGGATGAAGATTAGCTAG
- Protein Sequence
- MSTNNFDWLVSVDRCSRGDIVMATAARFAADNSPPTPAPASTPPAQSQTTQLIVLPASLHQTAANSAIVNAVPVLDVSALEQAADSSNESSATTEHPTDSHETEAIEQTSPHFITVTVASENDTVASHQGYHVQYVEPEVYASQTNANQAQMAYPVYTVGDSGALYASQGQYYAAHTGATAAANTVGYATPGGHYLVQQTVDAETLIASTRNSPQTTNAETNFVATAAVHATSSSSGQVNEEIGSTLGHATRVSPATVQWLLENYETAEGVSLPRSTLYAHYLRHCANNKLEPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPGSPLTTIEDTSRNISSGISGKVSGNMNRGFKRNSDSSDNSISVGVISQHLSYLGDGSNAIPNFPNIIFTSPLPKECSYDDVDTLKSIYREHLEAFLDAIMSLEFGTVESLWREFWRSQDNNNGDECEEEKYLSKSKLFALCTLEPIQIFIRNIDLTFYQNLIQVLIPDVLKPIPATLTQSIRNFAKSLENWLTTAMTGAPSGMLSAKLSAVSAFSSSLRRYTSLNHLAQAARAVLHNSTQIAQMLADLNRVDFHSVREQASWVCQCDHEIVARFEADFKLTLQQQNSLEQWASWLKNVVKSALKPYEGKATFSKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEATGIVPIAVMIEGIKQDTTVNNVTMCGSDLNICNGNFNQSNSKLGCISPTDPSKRMKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00950456;
- 90% Identity
- iTF_00307310; iTF_00626802; iTF_00625889; iTF_01120616; iTF_00433776; iTF_00956048; iTF_01498616;
- 80% Identity
- -