Basic Information

Gene Symbol
-
Assembly
GCA_032357855.1
Location
JAUELO010000132.1:1804738-1821602[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 5.8e-06 0.0029 20.3 1.0 1 23 205 227 205 227 0.98
2 29 0.026 13 8.8 1.5 1 23 250 273 250 273 0.96
3 29 0.00027 0.13 15.1 0.7 2 23 280 302 279 302 0.96
4 29 0.00012 0.062 16.1 0.8 1 21 322 342 322 343 0.95
5 29 0.00055 0.27 14.1 1.4 1 23 394 417 394 417 0.96
6 29 0.00011 0.055 16.3 0.1 1 23 490 513 490 513 0.96
7 29 0.0075 3.7 10.5 0.4 1 23 519 542 519 542 0.96
8 29 0.11 56 6.8 1.5 1 23 555 577 555 577 0.97
9 29 3.3e-05 0.016 17.9 0.9 3 23 622 643 621 643 0.96
10 29 0.23 1.1e+02 5.8 0.8 2 23 706 729 705 729 0.94
11 29 2.9 1.4e+03 2.4 0.0 2 23 738 760 738 760 0.84
12 29 0.096 48 7.0 0.0 2 23 767 789 766 789 0.94
13 29 0.44 2.2e+02 5.0 0.4 7 23 803 819 797 819 0.89
14 29 0.57 2.8e+02 4.6 1.5 1 23 851 875 851 875 0.93
15 29 0.0002 0.097 15.5 3.3 1 23 878 901 878 901 0.97
16 29 0.13 65 6.6 0.6 2 23 908 930 907 930 0.95
17 29 0.003 1.5 11.8 5.1 1 21 957 977 957 978 0.95
18 29 0.0025 1.2 12.0 1.8 2 23 992 1013 991 1014 0.93
19 29 0.33 1.7e+02 5.3 1.1 1 23 1017 1040 1017 1040 0.94
20 29 0.087 43 7.2 3.0 2 23 1047 1070 1046 1070 0.90
21 29 2.8 1.4e+03 2.4 0.2 2 23 1078 1100 1078 1100 0.94
22 29 3.4 1.7e+03 2.1 0.0 2 23 1107 1129 1106 1129 0.87
23 29 0.21 1e+02 6.0 2.7 2 23 1138 1160 1138 1160 0.96
24 29 0.34 1.7e+02 5.3 1.1 2 23 1166 1188 1165 1188 0.93
25 29 0.0092 4.6 10.2 0.2 1 21 1288 1308 1288 1309 0.95
26 29 0.3 1.5e+02 5.5 1.9 2 23 1406 1428 1405 1428 0.94
27 29 0.3 1.5e+02 5.5 0.2 2 23 1435 1457 1434 1457 0.94
28 29 0.28 1.4e+02 5.6 1.8 1 23 1468 1490 1468 1490 0.97
29 29 0.0023 1.1 12.1 0.3 3 20 1499 1516 1498 1518 0.95

Sequence Information

Coding Sequence
ATGATAGAAGAAAACGTTGATATGAATTATATTAACCGCACCGGCCTGATTAAATTAGGTAATCTTAGGCTAATAGCAGAGGACGATCGACTACCAAAGTGTCTTTGCTATCGATGCATGTACAATTTGGAAAACTTTTACGACTTCAGGACAGCATGTGTTAATGCAGTCGCCCTTTTGGAAAGCTTTCTGTGCCCAGATAACAATgcaaATGATCACGACAGAAGAAATCCTTCAGAACATTATTCGGAATTACGTTCGGAACTCCTCAAGGAAAAAGAGCATATGCCAATACTCATACCCGAAGCCCCCGTAGTCAATCCAAATGCAGCTTTGGGTACACCACCAAGACTTAATTCTGATGGAGAAGCAGATAATGATATCGAGGAAGTTCTTGAGCAAAGTGGCACTGACGAAGCTGCGGACGATGCCGAAGACAGAAAGTCGGAGGAATACGAGATGGATATGGAAACGAATCCCAGTGACTTTTTGGAAATGCCACCAATGGTCACAGATGATGCGGAAGAAAATGAGACAACGAACAGAGTTTCCGCGCGAGGGCGTGCACGAGATTCCAGGGGATTTCAGTACAAATCTGAGCAACACGAAGTTTACGTCTGCTCACTTTGTAATAAGGCCTTCAGTTCAAAAGGCCATTTGTCCCTTCACGCGAGAATACACGTCGGTGCAGGTGATGTCATCGGTGAAAAGGTTATCACTGACGATCACACTTCTTACAAAAGGCCCTATCAATGCGACCTCTGCTATAAGGCTTATTCAACAGCTAAACATCGATGGGGTCACGTCTCAACTACTCATAGagGTCATCCTGCGGTGACGTGTAGATATTGTTCGCGCATTTATTCCACACGAGTAAACTTAGAAGAACACATCAAATCCAAGCACACGGGTCTACCACTTCCGATGGAAGTTCCAGTTTCCTACGTTCAACCAGAAAACAAATACCAGTGCAAGACTTGTCCCAAGATGTATACGAACACAACAGACCTTAACAAACACAGTCGAGTCTGTACAGGAAGCCAGCAAAAAGAACTGCCAAATCATGATACTGCCATAGAGAAGATCAAGAAAACTCAACTCGACACTTCGGACATGTCTAGTAATGATTCGAACAACAGCTTTAAAGAACACGAGCTTTCACACGAAGCTGAAAAAccctatttttgtttattatgcgAAAAAGACTTCGCCCATAAATCTTCTTTGAGTAATCACATTGTCACTATGCATGGTGTTGATCCTAATCCCATTGTTGAGAGCGATAGGTGTTTGAAAAAGTCGCTTTTTGCTCACCAGTTGAATAAAAATACGAAGTCTGCGAACGGGAAACCGAATCTGGTCATCAACAAAGAGGAAGCTTCGTCGTCTTATCCCGAAAAAGCTTTGGAAAACGAGGAAGAAGATCACGAAAGCAACCAGGACAAGATGATTGAAATTGAAACAGTCTTCGTTTGCGAAATCTGTACTCGAGATTTTAATGACAGAGCATCATTGTGGCTTCATATCCGAGCCACACACAAGGAATGCGCCGCCTTTGCTTGCGGagtctgtttgaaaatttgttccgaCAACGCCCAGTTGCTCAATCATGTAAATATGTATCACGGGGGTTCCAAACTTCTCATGTCTGAACAGAGGCGCTACAGCTGTACAATTTGCGGCAGGCAGCACGATTCTCGAAAGAAGTTAATCACCCACGTTTCGATTCACAACGTGGATCCCAGTTACGATCCTTCGAGTTTCGTTCAACTCAACAGCAACTATTACAACGAAAATCTAAACAGCAACGAAGCTAACGAGCAAGTGATGGATGGCGATGTTGAGGATGGAGAAAAAGTCGACTGCTATATTTGCTACAAATCATTCCCCAATGAAGATCATCTTATCAGGCATCAGCGAAACGCTCACAAATCTGATCCAGCGGTAGCGATCGGAGAATCCACAGCGAATGGTAGCGGAACCGGGCCTAACGGGAATGGAAATAGAGCgcaatatcatttatttttcgtCTGCGAACTTTGCGGCAGTTCTCATCCCAGTAAATGGGAACGCTGGCTTCATGTTTCCAGCGTTCACGGAAACGAACCTGCGATCAAGTGTGAGAGGGAAGATTGTGCGAAGATATTTGCGACAAAGTCTCTTCGAAATGAACACGCCCAGCATCATTTGATCCAAGGTAGTTCGCCGAACACTTGCGAGATCTGTGGGAAATTGTGGGGAAGTCGAGTAGATTATTGGAAGCACGTGATGGGAGTCCACTCAGACACTGTTCCTCTAATTTGTGGAGTGTGTCTCAAAGTATTCCCTAATGTTCTTCAGTTAAGTTCTCACGTGAAGGTGAACCACTGGCCTTTGACAAACGGTGATTTCAGTTGTGATATTTTCGGCAGGCCTTATTCCAATAAGTCTAAAATGTCCAGGCACAGAAAGATTCATGGTCTTGATGGCGAGGGTCACGCGCATCCGGATCCTAGTGAATACATCAACGATTCGGTGAGACTGGACAACGGAGGAGCCGTGGAGGTTGACTACAGTTGTGAAATGTGTGGGGATTTGAAGTTCTTGAACCTGGAAGACCTCTGCAATCATCGAAGAATGACGCATAGCCTCTTCCCCTGCGATTTGTGCAACAAATGTTACGGAAGAACTTCGCACTTGTGGAAACATGTCAATCGGGTTCATAAGGGTCATGAGGACGTCACCTGTCGGTTTTGCATGAAGACGAGCGCCTCCAGAGATCACTTGGCAGCTCACATTGCTAAGATTCACAGGTACGAGCCTGAGGtgaaaaacgatacaagagaGTCAACGAATTTCAAGGTCGCAGTTCCTGAAGACGAGATTCTCCATCATTGTGAGAAATGCAACAAGGGCTTTCACAAACGGTACTTACTCCGGCGTCACATGAAAGGGTGTCAGAACTATCGAAAGGATCCTGGCGCGCTTTTGACCAGGTGTCGAGCCTGCGAAAGGATATTTAAGGATCGAGCGAGTCTTCAAAAACACATCGAGAATCATCACAGCAGTTACACTTGTCACTTGTGTAACGAAACGATAACTTCGAAGCTTGGGATCATGACACATAATCGGGTTAACCATATGGACCATCCGGATCTCACATGTGAGCACAACAGTTGCAAGAAGCTTTTCCGCACGAAGGAGGATCTCGAGTCTCATAAAAAAGATCATAAGTATCACACAAGTCCGAATGTTTGTGATTTCTGCGGGGACACTGTCGAAAATAAACTTAAGTTGAAGATGCATGTCTTGTCGCTGCATCGAAACGAAATCGGAGTTTCTTGCGGCGTCTGTCTGATTCCGATGAAAGACCCGAAGGATTTGAAGAAACACGTGGAGGACACTCATGAAAATATTCTTTCGAAACCAAATACTTGTCAGGTTTGTGGAAAGCAGTATGCGTCAAAGTGGAAAGCCTTTGATCATACCAAGAAGTGCCATGGGAAGGTTTTCAAAACCTGCAAACAATGCCTGGCTGTGTTTATTACCGAAGAGAGTATGAAGAACCATTATGAACACGTTCATAACGTTCCAAAAGACCAACTGGCCACTTTCGAATACCGACTGGAAATCGGACGCAAACGCCATTACGATTCCTTGGAAATCGTGATGAAGGAAGAGCCAGAGGAATTGGAATTCGATGAGGAACCGATCGAGGATTATACGAATGATTATAAGAGAAGGATATCTGATTCTGATGATTACGATGTTCGAGCAGATTTCTATATAAGAGAGAACAACGAGCAAGAGGAACCAATGCGACCTTTGAAGAAGATGAAGCTAGACTCAAAGACCAAAAAGAAGATAAAGCAACGAGAAACCTTCGAGTGCGAGAACTGCAAGATACAGTTTAATACCAAGATTATGTTTTGGAATCATATTAACGTTTGCCCGAAGCGGAATATTATTACTAAGGAGGATGATTCAAGTTTCCCAACGTCGATTCTCGAggcgcatttaaaaaataataacctgATTAAGAGGGAAGAACCTGATCAGGAACTTGACGAGAATAACCTGAACATTCCAGACTTCAATCTCTTTGAAGACATCAATATGCAGTTGTCGGGTCAGAAACCAGTTCAGAATCTCTCCCTGAAATCTTCTTCGATTAGCAATAAATGTTCGAGGAAGGATTCAAGAAAGGTTTACGATGAATCTACAAATACTGAGTGTACTTGCGAAGTTTGCGGGAAGCAGTGGCCTGCGAAGAAACATCTGTGGCAGCATTTGATTCGATTTCATCGAGCAGAGGCTGCTGTTACTTGCGGAGTTTGTCTGAAACTCTGCACAACTTATGAAGATTTAGCTGATCATCTGAAAGCTGCCCATGAAGCTTTGTTGTCCTGTGAGGGAAATAACTTCACCTGCAAAGTTTGCGGAAGGTACCACAATGCCAGGAGCAAATTGTTGCTGCATATGAGCATTCACATAAACTGCAAGAATAATCCGATGTGCAAGAAGTGTAATCGCAGTTTCGAAACGGAAGCAAAATTGAAGGAGCATATTGGGAATTGCGAGGGAAGACAGTCAGGATTGGGAATCAGACATGATGCAGAGGAAGATGTGAAGAATGATAATGATATTGATGATAATGATGAGAAGGGAAGTTTTATTGGTGATGAGGGTGATGATGGAGACGAGAAAGAAGGAGATTATGAATCGGAGGGAGAGAAGGGTTCCGATAATGAAGATAGCAGTTCGGATGACTCTGAAGATTCAGAAACGGATAGTTCCTCTAGCTCGAGTGATGATGAAGATATTGAGAATGCAGAAGAAAATGAAGTAGCGGCTGAATCGAGAACTACAAGTAGACTCGGGGAACTGAGTTGCACGAGTGATAGTGAGGAAGAAGGCTCGGATAATTCGGAGGACCTTGAAGATGCTGATGAGATTAAGACTCATGTTGGGAttgaagataggaaagaaaagTTGAGGAGTAAAGAAGTTAAAATGGAAAATATGGGAATTGAGTCGAATCCAGTGTTGACAGAATCTGATACGAAAGATTCTGCAGCTTTCGGAGGATTGAAAAAGAAACCGGTGAAGATGGAAATAGAACATATGGATTACTCGGATGATGAAGGTCCTCCGGTTTTAAGTCCAATGATGCCGTTGTTGCCACCACAAGAGGGAGAGTTGAATAGTCAGATGGATGAGATGAGTCATAAGTTGAGTCCTATGGTAACTTTGGAAACTAAACTGGACAAAGAGATGGAAGATTGTGAGTTTGAAGATGTAAGGATCAAGTTCCAGGATCTTGAGAATAAGAATGAGATGAAGAGGGAAAACTCGGAGGGATCGGAAGAATCAGAATCAGAGAGCGAGGATGAGAATAAAATGTGTATCTATGAGGAAACTGGGAGTCGAGAGGCTAAGCAAGAAGATCTCAGTATGATCAGTGATGAGGAAGAAGATACAGAAATAAAGgAAGCAGCGAAGAAAGGAGAAACTGTAGAAGACAAAGAAACAGAAGTAGTCTCTGTAGAATCTGAAGATGAAAGTGAAAACGAAGAAGAGGATGAAGAATCCGAGGAAGAAAGCGAGCAGGTCCAAATTGCAAACCACAGCAGTCCCGCAACAATCGATCATTCAGAAACTCTTTCACAAGACTTTGAAGGGGAAAATTCAGATCAGGAAGAAGATGAAGAAGAGGAGGAAGAAAATGAAGATGCAGAAGTTGAAGAAGCAGAAGAGGACCTCACAATTGAAAACGCTGAAGTCGAAGAGGAACTAGCCGAGAATCATTCCATCGTGGAGGAAGAAGTCGCAGTAGAAGAAAGCTACGAAGACGAACCCTTGGTGGATGAGGAAATGAACAACGAAGATCATTCCATTCAAAACTTGAATAAAACCATCCTCACTGTCGGCAAGGATTCTGAAGGTAATCCCATATTGATCCGTGAAGTGGTAACTCAGTATGCTTATCCGGACGAATTCGATTGCGAATCCGACTATGCACACCTTCCACAGGAGCGAAATTCTCTTTATAATGCCCACGAAGATCAGAGAATATCGGAAGAAAACTTTGCTTTAAATATTGATAGTCTCGATCAAACCACGACTGAACCGGAAGTCCAGACGGTAGCCGAATTAGGTCATCACGAAGAGGTGGAAACCGATGAACAGGTTGAAAACAAAACTGATAGTGATATCCAAGAGTCAACAACGAGTGCCAAAAGTTAA
Protein Sequence
MIEENVDMNYINRTGLIKLGNLRLIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLESFLCPDNNANDHDRRNPSEHYSELRSELLKEKEHMPILIPEAPVVNPNAALGTPPRLNSDGEADNDIEEVLEQSGTDEAADDAEDRKSEEYEMDMETNPSDFLEMPPMVTDDAEENETTNRVSARGRARDSRGFQYKSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCYKAYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRVNLEEHIKSKHTGLPLPMEVPVSYVQPENKYQCKTCPKMYTNTTDLNKHSRVCTGSQQKELPNHDTAIEKIKKTQLDTSDMSSNDSNNSFKEHELSHEAEKPYFCLLCEKDFAHKSSLSNHIVTMHGVDPNPIVESDRCLKKSLFAHQLNKNTKSANGKPNLVINKEEASSSYPEKALENEEEDHESNQDKMIEIETVFVCEICTRDFNDRASLWLHIRATHKECAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYDPSSFVQLNSNYYNENLNSNEANEQVMDGDVEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSDPAVAIGESTANGSGTGPNGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSVHGNEPAIKCEREDCAKIFATKSLRNEHAQHHLIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSSHVKVNHWPLTNGDFSCDIFGRPYSNKSKMSRHRKIHGLDGEGHAHPDPSEYINDSVRLDNGGAVEVDYSCEMCGDLKFLNLEDLCNHRRMTHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCMKTSASRDHLAAHIAKIHRYEPEVKNDTRESTNFKVAVPEDEILHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCEHNSCKKLFRTKEDLESHKKDHKYHTSPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDTHENILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFKTCKQCLAVFITEESMKNHYEHVHNVPKDQLATFEYRLEIGRKRHYDSLEIVMKEEPEELEFDEEPIEDYTNDYKRRISDSDDYDVRADFYIRENNEQEEPMRPLKKMKLDSKTKKKIKQRETFECENCKIQFNTKIMFWNHINVCPKRNIITKEDDSSFPTSILEAHLKNNNLIKREEPDQELDENNLNIPDFNLFEDINMQLSGQKPVQNLSLKSSSISNKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTTYEDLADHLKAAHEALLSCEGNNFTCKVCGRYHNARSKLLLHMSIHINCKNNPMCKKCNRSFETEAKLKEHIGNCEGRQSGLGIRHDAEEDVKNDNDIDDNDEKGSFIGDEGDDGDEKEGDYESEGEKGSDNEDSSSDDSEDSETDSSSSSSDDEDIENAEENEVAAESRTTSRLGELSCTSDSEEEGSDNSEDLEDADEIKTHVGIEDRKEKLRSKEVKMENMGIESNPVLTESDTKDSAAFGGLKKKPVKMEIEHMDYSDDEGPPVLSPMMPLLPPQEGELNSQMDEMSHKLSPMVTLETKLDKEMEDCEFEDVRIKFQDLENKNEMKRENSEGSEESESESEDENKMCIYEETGSREAKQEDLSMISDEEEDTEIKEAAKKGETVEDKETEVVSVESEDESENEEEDEESEEESEQVQIANHSSPATIDHSETLSQDFEGENSDQEEDEEEEEENEDAEVEEAEEDLTIENAEVEEELAENHSIVEEEVAVEESYEDEPLVDEEMNNEDHSIQNLNKTILTVGKDSEGNPILIREVVTQYAYPDEFDCESDYAHLPQERNSLYNAHEDQRISEENFALNIDSLDQTTTEPEVQTVAELGHHEEVETDEQVENKTDSDIQESTTSAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00089823;
90% Identity
-
80% Identity
-