Aque008946.1
Basic Information
- Gene Symbol
- KRBA2
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000100.1:5526789-5551005[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.2e-05 0.016 18.0 4.5 1 23 320 342 320 342 0.98 2 14 2.3e-05 0.011 18.4 2.6 2 23 347 369 346 369 0.96 3 14 2.7e-05 0.013 18.2 0.6 2 23 430 451 429 451 0.97 4 14 3.3e-06 0.0016 21.1 2.4 1 23 457 479 457 479 0.98 5 14 0.0025 1.3 12.0 0.3 2 23 486 507 485 507 0.95 6 14 4.8e-07 0.00024 23.7 0.9 1 23 525 547 525 547 0.98 7 14 4.3e-07 0.00021 23.9 1.2 1 23 553 575 553 575 0.98 8 14 6.8e-06 0.0034 20.1 1.0 1 23 581 603 581 603 0.97 9 14 0.00064 0.32 13.9 0.2 1 23 609 631 609 631 0.99 10 14 0.00013 0.064 16.1 0.2 3 23 639 660 637 660 0.92 11 14 1.4e-05 0.0072 19.1 1.3 1 23 666 688 666 688 0.98 12 14 0.00032 0.16 14.8 4.7 1 23 694 716 694 716 0.98 13 14 5.1e-06 0.0025 20.5 0.3 1 23 722 745 722 745 0.96 14 14 3.3e-07 0.00016 24.2 1.0 1 23 751 773 751 773 0.98
Sequence Information
- Coding Sequence
- ATGGTATTCAAGACAGGTGATGAAGAGGATCTAGGCTCCTACATAGATATTGCGCTTGTGGATACTATTGCAAAAATACTTACACGGATCTTCCTGGATAGGCTTGTTGAGTGGACAAATGTTGCGAATTGTATACCCGAATTCCAGCCTCTCTCACAACTCGAATCCGAAGCCGATGCACTGAGAATAATCGATCCTCTctcaaaaaatcatttagaaaatgGAAACAGAGGACAAATTGATGTGATAGATATGCCAGATGAAGATACATCaccttacaaatatttatttgtctACGAAGACAGATCATCAAGATATATTGTTCTTAAAGCGATGAAAAGTAATGATCCAAAAAAAACAGCGATGCAACTTCTAGACGTGATAACAATCATCGGCGTCCCTCAAATTTTACAATCCGGAAATGGTCGAAATTTCACCGACCAAGTTGTTCAAGAATTGCGTTCTTCGTGGGATGGATTTAATATAATTAGTGCCGACGTTCTCAAATTTGCTTCTagtgaaagaaatttcaaaaacattattaaatcCTGGCTGACAAAACACAAAAACAAAACGTGGCTTGAAAGTATCAAGTTTATTCAAGTTTTACAAAACGCAACTTTTCCTTCCAAAGATGGCAAATTGCCTTACGAATCACTTTTTAGAAGAAACGTCTATGAAGATTTTCTCAACTGTAATGAGAACAGAGATGATTTTATTGGTGAGGAATTTGAATTTGAGAGAAATGATCGTGATGATTCTTCCATTTCTGATGGCGATAATCATGAAGCTAATAATCATGATGATGAAATTAGTGAAGAATCTCACAACGAAACGAGTAACAATAaactttcagaatctaatttcctCACTGATAAAAATGAAGAAACTCCTGCGGATGATTCTATTTCAGAAGACGAAGTGACTTCTCCTACAAAATCAACAGAAAAACAACTCCATGAGTGTAAAATCTGCCCCAAAAAATACACGAAACTTGGACACTTGACGAATCACCTAAAATCGCACAAACCAAGCAAAGAGTGcacaaaatgcacaaaaaaatttcGCTCTCAGTCTCTTTACGAGAATCATATGAGCAAAGTGCATCAGGAATTATCTGAAATTAACAGCTTGGAAACCGAAGACCCTAAGAGAAAAAAGAATGCTGCAAGTAATGATTCACTAGAAAAAGAATTCGAGGATATTTCTTCAGAAAAGGtatcaaaatcagcaaaaagaCCGAGAAAGCTCCGGGAAAAGCGACCAAAGTTGGACGAGAGTTTATTAAAATGTAGTTACTGTGAGcaagaatttgaatttccgaGTGTTTTGAAAAGACATATTCGTTCACACACGAATGAGAGACCCTACGTTtgtaaaatatgcaataaaagCTTCAAGCAACTTGGACATCTCAGCCAGCATTCCATAACTCACACAGATTACAGATCTCTACAATGTAGTGAATGTAGCCTCAAATTTGAGTCACTAGATGCTCTCAAGATTCATTCCCAGAACCATTCGGGTGAACCGAATTTAAAGTTGAATACTAATCTCTCTATGTCTCGTCTGTTCGAATGCGATGTCTGCAAAAAAGTATTTACTACAAAAAGCGTTTTGGAGAGACACATTTTCACCCACACACACGAGAGACACTTTGAGTGCGAAGTTTGCGGAAAGCGATTCAAGCAATCAGGTCACGTTAAATCTCACATGCTGGTTCACACTGGAGAACGAAAATTCCCTTGCACTATTTGCTCAAAACGTTTCAGTTtggcaaattctttgaaaaaacatatgtacattcACAATGGAGACAAACCATATCAGTGTGATGTATGTGGTGCAAGATTTCTCGAGAAAAGAAATCTGAATGGACATCTGATGACTCACACGAATGAAAAACCCTTTGGCTGCAAAATCTGCGGGAAAAGATACACTCTCGCTGATACTTTGAGACGTCACGTGAGTGCTGCTCACGAGGATGGAAGAACATATCAGTGTGAAATTTGTGCGAAGATGTTTAAGCAACTAGCGCATTTGTCAGTTCACAAAAAAGTGCATAATGATGAGAGACCTTTCCAGTGCCACCTTTGCGAGAAGAATTTTAAGcataagaatgttttaaagtcTCATCTGGCTATTCATGCCAATGTTAGGCCTTTTGAGTGCAATGAGTGTAGAGCTACTTTTGTGAGAAAGACAAATCTGCAGACACATATTGCTTCGGCACATATGAATGAGAGACCTTATACTTGCAATATATGCGGGAAAAAGTTTAAACAAGTCAGTCATCTGAATGGACACATTATTGTACACAGCAATTCTATGCCTTATCAGTGGGGCTGCCCTGAACCAGCCCCCTGCATCACTGAGCTGAAAGTGTCCTGA
- Protein Sequence
- MVFKTGDEEDLGSYIDIALVDTIAKILTRIFLDRLVEWTNVANCIPEFQPLSQLESEADALRIIDPLSKNHLENGNRGQIDVIDMPDEDTSPYKYLFVYEDRSSRYIVLKAMKSNDPKKTAMQLLDVITIIGVPQILQSGNGRNFTDQVVQELRSSWDGFNIISADVLKFASSERNFKNIIKSWLTKHKNKTWLESIKFIQVLQNATFPSKDGKLPYESLFRRNVYEDFLNCNENRDDFIGEEFEFERNDRDDSSISDGDNHEANNHDDEISEESHNETSNNKLSESNFLTDKNEETPADDSISEDEVTSPTKSTEKQLHECKICPKKYTKLGHLTNHLKSHKPSKECTKCTKKFRSQSLYENHMSKVHQELSEINSLETEDPKRKKNAASNDSLEKEFEDISSEKVSKSAKRPRKLREKRPKLDESLLKCSYCEQEFEFPSVLKRHIRSHTNERPYVCKICNKSFKQLGHLSQHSITHTDYRSLQCSECSLKFESLDALKIHSQNHSGEPNLKLNTNLSMSRLFECDVCKKVFTTKSVLERHIFTHTHERHFECEVCGKRFKQSGHVKSHMLVHTGERKFPCTICSKRFSLANSLKKHMYIHNGDKPYQCDVCGARFLEKRNLNGHLMTHTNEKPFGCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECNECRATFVRKTNLQTHIASAHMNERPYTCNICGKKFKQVSHLNGHIIVHSNSMPYQWGCPEPAPCITELKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200975;
- 90% Identity
- iTF_00089804;
- 80% Identity
- -