Aque019778.1
Basic Information
- Gene Symbol
- spop-a
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000276.1:598058-610523[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.5e-10 5.4e-07 32.1 0.1 56 109 3 56 1 57 0.94 2 5 8.3 8.1e+03 -0.6 0.0 81 106 60 85 55 88 0.84 3 5 3.9e-26 3.8e-23 84.1 1.1 4 109 124 227 121 228 0.95 4 5 0.075 73 6.0 0.1 79 109 229 259 225 260 0.88 5 5 4.1e-09 4e-06 29.3 0.1 57 107 294 344 286 347 0.90
Sequence Information
- Coding Sequence
- atGATTGTTGAAGATGTAGATTCAAATGTGTTCCATGAAGTGTTGCGCTATATTTACGTTAATACTGTAAAGGAGTTAGAAACTCATGCCGAGAAACTTTTGAAAGCAGCAGATAAGTACGATATACCGAAACTTAAATTGCTTTGTGGTGAGGAATTGTCTAGATCTTTAAAAGTGGAAAACGCTATACATTTACTTGAACTTGCTGATCAATGGCATGAAAGCACCCTAAAAGAAAGAGCTTTGAAGTTCATACGAGGTAACATGGAACAAATTTTGCAGACTGAAAATTACCAAACTTGGCGTCGCACAGCACCAGCATATCTCATGGCTGATATAATGGAAAccatgATAACCAATTGTTCTTTACTTTTCGAAAACAATGcgcttacaaattttaaaatcgttgtcGAAGCCAGGGAATTTTTAGTGCATAAAGAGATTCTTGCTGCAAAGTCGCCAGTATTTCTGGCTATGTTCAACAGTGaaatgaaagaaaagaaagaaaatcagATGACTATTGAAGATGTAGATTCAGGCGTGTTCCAGGAAATGTTGCGATATATTTACTTAAATACTGTAAAGGAGTTAGAAACTCACGCGGAGAAACTTTTGAAAGCAGCAGACATGTACGATATACCGAAACTGAAATTACTTTGTGGTGAGGAATTGTCTAgatctttaaaaatagaaaacgcaGTACAATTACTTGAAATTGCTGATAAATTCCATGAAAGCGCTTTGAAAGAAAGTGCATTGAAGTTCATACAAAGTAACATAGAACAAGTTTCGCAGACCGAAAATTACAAAACATGGTGCCAAAGAGCACCAGGATATCTAGTGGCTGATATATTGGCAACTATTATTGTTCTTATTAAAGATTCTCCTGATTCTGATGTATTCCATGAAATGTTGCGATATATTTACTTAAATACTGTAAAAGAGTTAGAAACTTACGCCGAGAAACTCCTGAAAGCAGCAGATAAGTACGATATACCGAAACTTAAATTACTTTGTGGTGAGGAATTGTCTAGATTTTTAAAAGTAGGAAACGCTATACATTTGTTTGCACTAGCTGATCAATGTAATGAAAGTACTCTTAAATATAGAACACTGAAGCTTATACAAAGTAACATAGAAGGAATCTTGAAGACCGAAGATTATAAAACGTGGCGTCAAACAGCACCCGGATATCTCATAGCTGATATATTGGAAGCAGTTGCTaatATGAATATGCGAATGCTGTGGGACGGCTCGTCAGTCCCAGAAGCATTAGATTTGCTTCTAGAATCTCCAATGGAAGGGATCTTAGATAGTAAACAAACTGCCGATGCCCTCATAGACAAGGACATGACTATAAACATAGGTGAACCCACTCTGAAACTACGAACTTTGATAACTCGTAATAAAAGGCTAATTCTATCTAACGTATGTCCTGTTATTTCACACTCTGTACTCAAGAAATCACTGGAAGATATTGGAATAGTGACAGCTTCTACAGTAACCTTTCTTAGAGTTGGTTTGTCCGGCTAA
- Protein Sequence
- MIVEDVDSNVFHEVLRYIYVNTVKELETHAEKLLKAADKYDIPKLKLLCGEELSRSLKVENAIHLLELADQWHESTLKERALKFIRGNMEQILQTENYQTWRRTAPAYLMADIMETMITNCSLLFENNALTNFKIVVEAREFLVHKEILAAKSPVFLAMFNSEMKEKKENQMTIEDVDSGVFQEMLRYIYLNTVKELETHAEKLLKAADMYDIPKLKLLCGEELSRSLKIENAVQLLEIADKFHESALKESALKFIQSNIEQVSQTENYKTWCQRAPGYLVADILATIIVLIKDSPDSDVFHEMLRYIYLNTVKELETYAEKLLKAADKYDIPKLKLLCGEELSRFLKVGNAIHLFALADQCNESTLKYRTLKLIQSNIEGILKTEDYKTWRQTAPGYLIADILEAVANMNMRMLWDGSSVPEALDLLLESPMEGILDSKQTADALIDKDMTINIGEPTLKLRTLITRNKRLILSNVCPVISHSVLKKSLEDIGIVTASTVTFLRVGLSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -