Aque018539.1
Basic Information
- Gene Symbol
- lrrfip2
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000268.1:2621330-2643710[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-69 3.2e-64 219.5 39.5 1 182 29 210 29 327 0.87 2 2 2 9.8e+04 -7.9 9.1 181 248 266 332 230 364 0.57
Sequence Information
- Coding Sequence
- ATGGAGTCATCTGTAGCAGGACGGAGGCGAACTGCCACGAGGCATTCTGCCGAAGATCAAGCTCTGGACCAAATTGCCAAAGAGGCAGAAGCAAGATTAGCAGCTAGGCGACAAGCGAGAGCCGAGGCGAGGGAAATTCGGATGCGAGAATTGGAAAGGCAGCAGAAAGAAGCTGAAGAAAACGCAGACAGGGTGTATGATATGTgcacagTAGATAGCAGCCGAACGATGAGGGTAACGCCAGATCCTATTAGAACTTCCCGTCTTCttgcaaattcaaataacttTCAGTCTAGTCGGAGGTCATCTGAAGATTCTTTGGAAGATGCCGGTCTTGGTAGAGATCCGAGAATAGAacttaaagaatttgaagaaaaattcagaaaagcaaTGATTGCTAATGCACAATTGGACAACGAAAAGTCGTCTTACGCTTATCAAGTGGatttattaaaagataaactaGAAGAGTTGGAAGAAACGGCTGCTCAATTGCGGCGAGAACTGAGGGAAAAAAATCGAGAGGCAGAGCAACTTAAACGCATCAGTCAAAGATTGAAAGAAGACTTAGATATATGCAGAGCTCATTTAATAGAAAGGGATACGTTAATAGagAGTAGTGAAATAAGGAGAAAGGAAGACGCTGAAGCtgggaaaataagggaagggaaagatgtagaagtaggggaaatgacgGGTAAGGAAGAAGTTATTGTAAGGGAAAAGGAAGAAGATAAAGCTGAGAAAATGAGAGAAGGGGAAGAAGTTGAAGTAGAGGGAATGACGGGTGAAGAAGTTATGGTAAGGGAAATAAAGGAAGAGGAAGGAGATGAAGATGGGAAAATGAGGGATGGGGAAGAAGTTGTAGTAGAGGAAAAGGAAGAAGATAAAGCTGGGAAAATGAAAGAAGGGGAAGAAGTTGAAGTAAAGGGAATGACGGGTGAAGAAGAAGTTATAGTAAGGGAAATAAAGGAAGAGAAAGGAGATAAAGATgggaaaatgagggaaggaaaagaagttaaagtaggggaaatgacgCGTGAAGAAAAAGTTATagtaagggaaataagggaaaaggaAGAAGATAAAGCTGGGAGAATGAGGGAAGGGTAA
- Protein Sequence
- MESSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTVDSSRTMRVTPDPIRTSRLLANSNNFQSSRRSSEDSLEDAGLGRDPRIELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETAAQLRRELREKNREAEQLKRISQRLKEDLDICRAHLIERDTLIESSEIRRKEDAEAGKIREGKDVEVGEMTGKEEVIVREKEEDKAEKMREGEEVEVEGMTGEEVMVREIKEEEGDEDGKMRDGEEVVVEEKEEDKAGKMKEGEEVEVKGMTGEEEVIVREIKEEKGDKDGKMREGKEVKVGEMTREEKVIVREIREKEEDKAGRMREG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -