Basic Information

Insect: Amorpha juglandis
Gene Symbol: -
Assembly: GCA_949126905.1
Location: OX421365.1:4296427-4302205[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.74 47 5.1 2.0 1 19 28 46 28 50 0.80

2 16 0.0055 0.35 11.8 0.1 2 23 78 100 77 100 0.96

3 16 9.5e-05 0.006 17.4 3.4 2 23 124 145 123 145 0.97

4 16 0.028 1.8 9.6 0.3 2 23 149 170 148 170 0.95

5 16 0.0037 0.23 12.4 4.2 1 23 175 198 175 198 0.96

6 16 0.89 56 4.9 0.4 2 17 210 225 209 226 0.83

7 16 1.6 1e+02 4.1 1.6 1 23 268 290 268 290 0.97

8 16 0.061 3.8 8.6 2.6 2 23 318 340 317 340 0.95

9 16 7.9e-05 0.005 17.6 2.3 1 23 363 385 363 385 0.98

10 16 0.17 11 7.1 0.6 2 23 390 411 390 411 0.95

11 16 0.00033 0.021 15.7 1.5 1 23 416 439 416 439 0.92

12 16 1 63 4.7 4.0 2 23 449 471 448 471 0.88

13 16 8.9e-05 0.0056 17.5 1.5 1 23 477 500 477 500 0.97

14 16 0.0048 0.3 12.0 3.8 2 23 505 526 504 526 0.97

15 16 4.2e-05 0.0026 18.5 5.8 1 23 532 554 532 554 0.97

16 16 0.00018 0.011 16.5 0.4 1 23 563 586 563 586 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.74	47	5.1	2.0	1	19	28	46	28	50	0.80
2	16	0.0055	0.35	11.8	0.1	2	23	78	100	77	100	0.96
3	16	9.5e-05	0.006	17.4	3.4	2	23	124	145	123	145	0.97
4	16	0.028	1.8	9.6	0.3	2	23	149	170	148	170	0.95
5	16	0.0037	0.23	12.4	4.2	1	23	175	198	175	198	0.96
6	16	0.89	56	4.9	0.4	2	17	210	225	209	226	0.83
7	16	1.6	1e+02	4.1	1.6	1	23	268	290	268	290	0.97
8	16	0.061	3.8	8.6	2.6	2	23	318	340	317	340	0.95
9	16	7.9e-05	0.005	17.6	2.3	1	23	363	385	363	385	0.98
10	16	0.17	11	7.1	0.6	2	23	390	411	390	411	0.95
11	16	0.00033	0.021	15.7	1.5	1	23	416	439	416	439	0.92
12	16	1	63	4.7	4.0	2	23	449	471	448	471	0.88
13	16	8.9e-05	0.0056	17.5	1.5	1	23	477	500	477	500	0.97
14	16	0.0048	0.3	12.0	3.8	2	23	505	526	504	526	0.97
15	16	4.2e-05	0.0026	18.5	5.8	1	23	532	554	532	554	0.97
16	16	0.00018	0.011	16.5	0.4	1	23	563	586	563	586	0.95

Sequence Information

Coding Sequence: ATGACCATTGCAGAAAGACAAAATGCGGCGACATTCTTAGAGTACACCACGATCAAGCCGTTTTATTACCAGCAAGGAAATTTTAAATGCTTTTACTGCAACGAAGTGTTTCCTGAAATACATTCAGTGTTAGAACATTCCTTTTTCCATTCCACACCTGACAGATCAAGTTTACTAAAACAACATTtaaggaaaggaaaaagggtgaTCAAAGTTGATATTTCGAGCCTTCAATGCAGGATTTGCGAGCAAAAATATTCTGATATAGACGATATCAGGAAGCATCTAAACGTTGTTCACAAAAAGGAGTTCAATTCAGCCGGAAATGGCCTTATGGCATATAATCTTAGTCTCAACAATGGTCTTTTATATTGCCATAAATGTGCTAAGAGTTTTAATTCGTTCTTCCTTCTCAACAGGCACATGAATGTGCACTTTAACGTGGTATGCGAAGTGTGCGGACTCGGGTTCATGTCGCATCAGAGGTTGAACAACCATAGAGTCGTACATCAGAACGGGATACACGTATGTGACAAATGCCACGAGGTGTTCCCAACGAAACTGAAGCTCCGATACCACTTGCTTAAGAAACATGAGGTGAACAACACGAAGAAGATGAAACCCCTGAAATGTCCGCATTGTTTGGAAAGATTCTCGGAGCATTACCGCCTAAAAACAGAAGAGCGACAACGGCAAGGCGCGCTCACCAGCATATGGGAACTAACTTTATCAGAGCGGCAAAACGCTTCCGAACTACTAGAAAATACAACCGTCCGCCCGTTCGTTTACTGCAGATACTTCTTCAAATGCTTCTTCTGTCGAGAACAATACTCGGACGTCAAAATTCTCCTCCAACACACTCTTACTCATAAAGTACCCGAGAAGACCAAAATCCTGAAAGAATTACTACCAAAGGGAAAAAGAACAGTCAAAGTAGATATATCAGAATTGAAATGCAGAATCTGCCACCAACATTTTGgcgatttggatgaaattcggAGTCATTTAACTAAGGAACATGATAAAGAATTCACAAAATCTGGGCATGGATTGATAGCATACAACTTGAAGTCAGTAGACGGGCAATTCTCCTGCCATGTTTGtagtaaaatatttcaaactttCATTCTGTTAAATCGACATATGAACGTACATTTCAACAACGCAGTGTGTGAGACTTGCGGAGCTGGCTTCATGACTCACCAAAGATTATTACAACACAAAGAAATCCACCTACCAGGCGGTTATCCTTGCGATAAATGTTCCAAAGTTTATACAACTAACTCTAATCTTAAATTCCACAAAGAGAAAGCACACGAAGGGATAATGAAGTCACGAATGCTCCGTTGTCCTCACTGTACTGAAAGATTCTCTGAGCATTTTCGAAAATTGAAACATCTGAAAGATGCCCACGGCATAACGTTTACATATGAATGTGATGTGTGTAAGACCATGTTTTCCAGCAGACGAGCATTGACGATGCACACGAATAAATTCCACACAATAAAGACACAGTGTCAGGTATGCCAAAAGAGTTTTAGCTGTGTTACGACTTTGAAAAAGCACATGATATCACATACTGGGGAGAGGAATCATGTATGCGGGCTGTGCAAGAAGTCGTATAGACATAAAAAGAGTTTGAAGCAACATATGAGGGCTCATGTAAACGGGGAGCAATGTATTAAATTTTCTTGTTCTGATTGCGGAAATGGCTTCCCTAACAGAAATGATTTTAACAAGCACGTCAAAGAATGGCACCTGAGAAGTTATTTTGAATACACTGTAAATTGA
Protein Sequence: MTIAERQNAATFLEYTTIKPFYYQQGNFKCFYCNEVFPEIHSVLEHSFFHSTPDRSSLLKQHLRKGKRVIKVDISSLQCRICEQKYSDIDDIRKHLNVVHKKEFNSAGNGLMAYNLSLNNGLLYCHKCAKSFNSFFLLNRHMNVHFNVVCEVCGLGFMSHQRLNNHRVVHQNGIHVCDKCHEVFPTKLKLRYHLLKKHEVNNTKKMKPLKCPHCLERFSEHYRLKTEERQRQGALTSIWELTLSERQNASELLENTTVRPFVYCRYFFKCFFCREQYSDVKILLQHTLTHKVPEKTKILKELLPKGKRTVKVDISELKCRICHQHFGDLDEIRSHLTKEHDKEFTKSGHGLIAYNLKSVDGQFSCHVCSKIFQTFILLNRHMNVHFNNAVCETCGAGFMTHQRLLQHKEIHLPGGYPCDKCSKVYTTNSNLKFHKEKAHEGIMKSRMLRCPHCTERFSEHFRKLKHLKDAHGITFTYECDVCKTMFSSRRALTMHTNKFHTIKTQCQVCQKSFSCVTTLKKHMISHTGERNHVCGLCKKSYRHKKSLKQHMRAHVNGEQCIKFSCSDCGNGFPNRNDFNKHVKEWHLRSYFEYTVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01010625;
90% Identity: -
80% Identity: -