Ajug014849.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421382.1:13913591-13923432[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0085 0.53 11.3 2.4 1 23 298 320 298 320 0.98 2 12 0.015 0.97 10.4 1.1 2 23 328 350 327 350 0.94 3 12 5.7 3.6e+02 2.3 0.4 1 23 354 376 354 376 0.91 4 12 0.00047 0.029 15.2 2.4 1 23 381 404 381 404 0.98 5 12 0.00064 0.041 14.8 1.8 2 23 409 431 408 431 0.95 6 12 0.013 0.79 10.7 0.0 2 20 449 467 449 469 0.94 7 12 6.8e-06 0.00043 21.0 3.0 3 23 483 504 481 504 0.95 8 12 0.03 1.9 9.5 1.2 2 23 524 546 523 546 0.97 9 12 1.6e-05 0.00098 19.9 0.2 1 23 559 581 559 581 0.98 10 12 2.7e-05 0.0017 19.1 1.7 1 23 587 610 587 610 0.93 11 12 1.4e-05 0.0009 20.0 0.4 1 23 616 638 616 638 0.98 12 12 9e-05 0.0057 17.5 1.1 1 23 644 667 644 667 0.98
Sequence Information
- Coding Sequence
- ATGGATACAAAAATTAAAGCGTGTAGGATATGTTTGATCACAGACGTTAAAATGTATTACATTGATAATGTTTTGGAATATTACTTATCCTTAATTGCAAATGATGAATCCTACACATATTACCCTAACTACATATGTTACGAGTGTGCATCTCAGTTAATGAAGTTTATAaaatttaggaaaaaatataatgtagcaCAATCTATACTTCAAAATATGTTCAAGGAATGTGGTGagATAAAAGAACAAGACATTAAGAGCATAAATGTTTCTACTGTTTTATTGAAATCATGTTTGGGTTATCACAAATTACCTACAATATCTTttagtacaataaataatatgaatgcgGAGATGACAGCGCATGAAGATACCACATCTGGATATGAGATTAAATCTGATATTGAAGAGAGTGAAACTGATGATGACGATCAAGCCTTAGTTGAAGAAGAAATcgaattaaatattgatatcaaGGCATCTATTGAAGACGACAAACTTTATGATGAGGAtatagctgatgatgatgatgatgatgcaggaataaaacttgaaaatatgaGAACCTCATCTTTAGAGGAGGAGGAGCAATCAAATGCTTTACTTACTTTTGGCGTTATTGCCAATGAACTAACAAAAGACGACAAAGCTGATTCACAATTAAAAGCAGCAAAGGAAGTCCAAAAGCAGAAACGAGGGCAGACGAGAAAGCTTAGTGCTGCACCCAGCAAAGCAAAAGAACAAAAGCCGAAACGGACAAAGAACACCAGCCCAACGCTTGAAAACGATATGGACTtgaacaaatattttactatcatCAAATTATCGATGGAGGAACAAATAGAGGAATTCAACATGCGCAAGCAGTCATCCAATTATCTGGGCGCACCGTTCCAGTGCAATCTGTGCTTCAGGGGGTTCGTAAGCACGCAGGCATGGAAGCACCATCTCTTGAAACACGATCCTAGCACAGGTGACATAGAGTGTCCTATATGCAAGCTCAGGTTCAAAAGGAAAAACGTTCGAAACAATCATGCCAAAAGAAACCACGAGTTTAAATACATTTGCAAGTCCTGTCCATACATCTCCACGGATAAattACCAGCGAAACAGCATAAGAAGTGGCATGACGGTGTCACATATAAATGTGAACTCTGCAATGTAGTTTTCAAaaaGCGGACATCATATCTAAACCATGTGAGGAAGAAACACCCGTCGGATTGTATTTGCGATGTGTGTGGACACTCGTTCGCCAGTCAAAAGGGACTCGTCCAGCACAAAAAAATTATGCATAAAAATGTTACTGAGAAAGTAGGAGACGACGGTGAAACAGAGCAGGGTCCGTACTGCAAGGAATGTGACATCAAGTTCGTATCGGTGGAGGCGTGGAATCGACACATGGTCATCTCCGACAAACACAAACAGACCGTGCATATTGATCACTTGTGTCGCGTGTGTGGTAAAACGTTCAAGAATTCAAAAGAGCTGCAGGTCCATCGCCGGAAGGAACACCCAATACTCAAAAGTTACGCATGCCGTAATGACCGTAAGACCATGACCCGGCCCGTCAAGTGCGAACatTGTTCAGAAGAGATCTCCAACCCGCGACAATATTATATTCACTACCGAAAGATGCATCCAAATGAAATTTACCCCCTTAAAAGGAAACACGAGTATATCTGTGATATTTGCGGAAAACGTTTTCCAAACAACGCGGTCCTAGTATATCACAAGCGAACGCATTCTGAAGAGCGTAAGTTCAAATGTGGCACGTGTGGGAAGGCGTTCCATAATAACGGCAACCTGCAGACGCACGTGACGCAGACACACTCCGACCTGCGGCCCTTCCCCTGCGCGCTCTGCAACAAGGCGTTCAAGAACAGGGGCGCACTCAGCAGGCACTCGAGGAGTCATTCGGGAGCAAAACCGTACAAATGCGAACTGTGCGGCAATTCGTTCACTTATTCAACTAGCCGCAACCTGCACATACGCACAGTACACATGAAGCAACCCATGCCGCCTCGAGTGCGACGTCGGGCGGCTAGCGGCCGGACACCGCCGACACCTGCGACTAATACCGACACCGACACGGACACCGATACAGACACCGATACCAGCCGCGGGTGA
- Protein Sequence
- MDTKIKACRICLITDVKMYYIDNVLEYYLSLIANDESYTYYPNYICYECASQLMKFIKFRKKYNVAQSILQNMFKECGEIKEQDIKSINVSTVLLKSCLGYHKLPTISFSTINNMNAEMTAHEDTTSGYEIKSDIEESETDDDDQALVEEEIELNIDIKASIEDDKLYDEDIADDDDDDAGIKLENMRTSSLEEEEQSNALLTFGVIANELTKDDKADSQLKAAKEVQKQKRGQTRKLSAAPSKAKEQKPKRTKNTSPTLENDMDLNKYFTIIKLSMEEQIEEFNMRKQSSNYLGAPFQCNLCFRGFVSTQAWKHHLLKHDPSTGDIECPICKLRFKRKNVRNNHAKRNHEFKYICKSCPYISTDKLPAKQHKKWHDGVTYKCELCNVVFKKRTSYLNHVRKKHPSDCICDVCGHSFASQKGLVQHKKIMHKNVTEKVGDDGETEQGPYCKECDIKFVSVEAWNRHMVISDKHKQTVHIDHLCRVCGKTFKNSKELQVHRRKEHPILKSYACRNDRKTMTRPVKCEHCSEEISNPRQYYIHYRKMHPNEIYPLKRKHEYICDICGKRFPNNAVLVYHKRTHSEERKFKCGTCGKAFHNNGNLQTHVTQTHSDLRPFPCALCNKAFKNRGALSRHSRSHSGAKPYKCELCGNSFTYSTSRNLHIRTVHMKQPMPPRVRRRAASGRTPPTPATNTDTDTDTDTDTDTSRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063824;
- 90% Identity
- iTF_00063824;
- 80% Identity
- -