Basic Information

Insect: Amorpha juglandis
Gene Symbol: -
Assembly: GCA_949126905.1
Location: OX421379.1:12897787-12910607[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.6 1.6e+02 3.4 0.0 3 23 118 138 116 138 0.95

2 19 0.067 4.2 8.4 0.4 2 23 142 164 141 164 0.94

3 19 0.21 13 6.9 0.4 3 23 394 415 393 415 0.96

4 19 0.12 7.6 7.6 0.3 1 20 423 442 423 444 0.95

5 19 0.056 3.5 8.7 0.1 2 23 454 475 453 475 0.93

6 19 5.7 3.6e+02 2.4 0.5 1 23 491 514 491 514 0.81

7 19 0.012 0.75 10.8 1.5 1 23 523 546 523 546 0.91

8 19 4.8 3e+02 2.6 0.3 8 23 597 613 594 613 0.89

9 19 0.00019 0.012 16.4 0.1 3 23 625 646 623 646 0.94

10 19 0.07 4.4 8.4 0.4 1 23 651 674 651 674 0.96

11 19 7.2e-05 0.0046 17.8 2.3 1 23 680 702 680 702 0.97

12 19 3.8e-05 0.0024 18.7 1.8 1 23 709 731 709 731 0.98

13 19 0.0001 0.0064 17.3 2.3 1 23 736 758 736 758 0.96

14 19 0.001 0.065 14.1 1.9 1 23 764 786 764 786 0.98

15 19 9.2e-06 0.00058 20.6 1.1 3 23 794 814 792 814 0.97

16 19 0.0001 0.0065 17.3 2.2 2 23 821 842 821 842 0.98

17 19 0.001 0.063 14.2 0.7 2 23 850 872 849 872 0.97

18 19 0.00028 0.018 15.9 0.6 1 23 877 899 877 899 0.98

19 19 0.0009 0.057 14.3 0.9 1 23 905 928 905 928 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.6	1.6e+02	3.4	0.0	3	23	118	138	116	138	0.95
2	19	0.067	4.2	8.4	0.4	2	23	142	164	141	164	0.94
3	19	0.21	13	6.9	0.4	3	23	394	415	393	415	0.96
4	19	0.12	7.6	7.6	0.3	1	20	423	442	423	444	0.95
5	19	0.056	3.5	8.7	0.1	2	23	454	475	453	475	0.93
6	19	5.7	3.6e+02	2.4	0.5	1	23	491	514	491	514	0.81
7	19	0.012	0.75	10.8	1.5	1	23	523	546	523	546	0.91
8	19	4.8	3e+02	2.6	0.3	8	23	597	613	594	613	0.89
9	19	0.00019	0.012	16.4	0.1	3	23	625	646	623	646	0.94
10	19	0.07	4.4	8.4	0.4	1	23	651	674	651	674	0.96
11	19	7.2e-05	0.0046	17.8	2.3	1	23	680	702	680	702	0.97
12	19	3.8e-05	0.0024	18.7	1.8	1	23	709	731	709	731	0.98
13	19	0.0001	0.0064	17.3	2.3	1	23	736	758	736	758	0.96
14	19	0.001	0.065	14.1	1.9	1	23	764	786	764	786	0.98
15	19	9.2e-06	0.00058	20.6	1.1	3	23	794	814	792	814	0.97
16	19	0.0001	0.0065	17.3	2.2	2	23	821	842	821	842	0.98
17	19	0.001	0.063	14.2	0.7	2	23	850	872	849	872	0.97
18	19	0.00028	0.018	15.9	0.6	1	23	877	899	877	899	0.98
19	19	0.0009	0.057	14.3	0.9	1	23	905	928	905	928	0.98

Sequence Information

Coding Sequence: ATGACTTCAGACGAATCAGACGATGAACCGCTAGCAGTATTAGCagccaataaaaaattaaatccagAGAAATTTGCGGGAATAATTTTACCTAAAGATATTGAGATCATTGAGCCCAAaaggaagaaaaagaagaaatttTTGACCCAGAAAGGTCTATCGGTCACAATCAAATTACAGAACAAACTTAAAAATGCTGCGCCGCCTGTTGTGGAGAGGCCTGCAGATGTGTGGTTGTATTTAAAAGATCTTAACCCAAATGGCCCTTACAGTTGTTTGCTATGCTCGGATTGGTTCGTGAACAGAGCCAAAATAATCATACATTATGTTCTAAATCACAAGAAAGATTTTTGCGGGATATGCCGGTATTTCGTACCAGATAGAGAAGCATGGTGGGCACATGTGAAGTTCCACACCCCATGGCCATGTTCCCAGTGTGTGGAAAACTTCCACACTGAGAATGCTTTACGTCAGCATTTGAGTAGCGTTCACAACCTAGTCCACTGCCGGCTCTGCCACTTCCGAGTCTCAGATGATGATCAGTACAACACCCATCTGTTCCAAAAGCATAACGTCacaaacgttgggaccaaagaTGATGAAGTACTCTGGGAGTTAGAATACGACGGTTGCACAAAATTCCAATGCTTTTTATGTTCTAAAacaaacaatttgactaggatGTTTTTCAACCACTATATGGGCTACCATCACTTCACATTGAAATGCTTCACCAGGATTATTTCAGGGAGGGATTCACCATTTTTAGTATGCGGGGCAGATGTTAGTGCTGAATTTGTTGAGAACCAATTAAAGACTCAATCTAAATGTGGTTATCTCGATATTGAGAATACACCTGAAGGGAAAGATGTAGGACAAGCCATCAAGGACGATTCAACAATAATTCCAGAAGTCAAAGAGGAAATTGTTAGTGAACCGTTTCGAGATTTAAAATGCGAAGTTGATATTATGAAATGTGATGACAACAATGATGAGGATGACATATCGAAAACTTATAAAGGTGACGAGGACTTCGACGTAACGCTGATGGAGATGGTGTTGATACAGAAATGCTACTTTGATTATGTTAATTCATtactaaatgaaataaatatgaatgtggTGCCAAAAGTTTCTAACATTGTTTATGAAAAGGGTGCAATGGAGAAGCCATCGGACTGTCCACTGTGTAAAATGAAATTGGAGACTCCTCAGGAGTACTCATCACATATGACGAAGACGCACAGTGTGAAATGCCTGCCAATATACTCATGTAGAGTCTGTACATCGTCTTATGACACTCAGAATGAACTGGACACTCATATGACACAAGAATTGGGAGATTTTGAAGACCTCTGGATATGCCAGTTCTGTGACAAAGAGTTTGATGACCGTGAAGGAGCAAGGATCCATTTGACTGAACATTGGGATATAATACAATTAGACAATTGTTTCAGCCCACATTTGGGTTTTAAATGTCGATATTGCCCAACACTCTTTTGGAATGAGACTGACAGAGAAATACATCAAGTCAAAGTGCATTTTAACAAACATAAAGacgaatattataaatgcgagaACTGCAGTGAAATATTTAGTGATAAGATTTGGTACATCCATCACTACTTCGCTCAACACCACACAACAGAAGAGTCATTTCCCATGTACCTGTATAGGTGTACCCTCTGTTGTTTAGTACTGATGGACATACATGAAATGCGCAATCATTTCGACAGCAACCACCCTGAGGCGAGGAAAGTGTTCTGTTCTCTACACCCTTGCAAGTACAAGCCTCTGAGCCAACGGAAATCTTTTAAGATACATTTGAAGACAATTCACAAACCGTCAGGCCGTCCGGAAGGAGCAGTGAACTGTCCGATATGCAGCCGCGAGTTCAGAAGTTCAAGAGCACTGAGCGCACACATGGCGCAGGTTCACGGCCCGGGGAAGTTTAAATGCAAGATATGCAGGGAGGCGTTGAATACCGCTGATGAGAGgaAACTCCACTACCTGATTCGTCATCCAGGCCAGCATCCGTTTGAGTGCAACCAGTGTGGCAAGTCGTTCCAGTACAAGTCCTCGCTGTACATGCACAAGCAGGAGCACTTGCCAAACAAGCAGAGTTACACTTGCAACTTCTGCAAGAAAGTGTTTGCGAAGAAGGACTCGTTCCGCGAGCACCTGCTGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTGCGACACGAGCGCCGCCACACCGGCGAGCGGCCCTACGCCTGTCCGCACTGCGAGCGCACCTTCGCAGACAAGGGCGCCTGCACCTCGCACGCGAGAACTCATTCGAAGACACAGTCCTACGGCTGTATGTACTGCGGTCAAACGTTTGTGCAGAAATCAAAACTCACATATCACATCAGAAAGCATACAGGTGAAAatctGGAGACCTGTTCTGTATGCTCTAAGATATTCACCAGCGCTTGTTCGTTACGAGAACACATGAAGATTCATACATTAAACAAACAGTCTGTGAAATGTCCGCTTTGTGATCGCAAGTATCAAGACGAGCGGTACATGCTGCGTCACCTGCGCACGTCTCACACGCAGGGCCACTTCACATGCCCGCTGTGTCGCAAGTCGCTCACCAGCGCTGTGGGCCTGCGGCATCATGTCATCACGCACAGCCCGCTCAAAACATATAAGTGTCAAATATGTCCCAAAGGCTATTCCGCCAGAAAGTCGATCGTAAAGCATCTACGCAGACGTCACGGTCTCAAAGGCACTGAGATCAACATTAGAGACTTTTACAAAAGACTAGACCCTAGAGAATGTCAGTTAGGCCTCGACGAAGAACTAATGACAAGCATTTTCGGACCTCCTAAGCAGATCGTGAATCAAATATTATTCCGCAACTTTGTCAATGTAAATAGGGGTTTAGATTTAACGAAAAAACCCGAGGAAGTTCCTGTTGAAGAACAAATTGAACAACCAACTGAAAAAGTGCGATCTGAGGAAAATTCTGAAGATACAAGTGAGAGTACTGAGATTAAACAAGCTGACAAACCTATAAAGCAGGAAGTGGATGATAGTGAAGGCAACGAAGATCTGGAACCTACAGACTTCGTCAGTGTTAAGATTGAACCGATGGATGATGAGAGCTCAGAGTATATCATTTAG
Protein Sequence: MTSDESDDEPLAVLAANKKLNPEKFAGIILPKDIEIIEPKRKKKKKFLTQKGLSVTIKLQNKLKNAAPPVVERPADVWLYLKDLNPNGPYSCLLCSDWFVNRAKIIIHYVLNHKKDFCGICRYFVPDREAWWAHVKFHTPWPCSQCVENFHTENALRQHLSSVHNLVHCRLCHFRVSDDDQYNTHLFQKHNVTNVGTKDDEVLWELEYDGCTKFQCFLCSKTNNLTRMFFNHYMGYHHFTLKCFTRIISGRDSPFLVCGADVSAEFVENQLKTQSKCGYLDIENTPEGKDVGQAIKDDSTIIPEVKEEIVSEPFRDLKCEVDIMKCDDNNDEDDISKTYKGDEDFDVTLMEMVLIQKCYFDYVNSLLNEINMNVVPKVSNIVYEKGAMEKPSDCPLCKMKLETPQEYSSHMTKTHSVKCLPIYSCRVCTSSYDTQNELDTHMTQELGDFEDLWICQFCDKEFDDREGARIHLTEHWDIIQLDNCFSPHLGFKCRYCPTLFWNETDREIHQVKVHFNKHKDEYYKCENCSEIFSDKIWYIHHYFAQHHTTEESFPMYLYRCTLCCLVLMDIHEMRNHFDSNHPEARKVFCSLHPCKYKPLSQRKSFKIHLKTIHKPSGRPEGAVNCPICSREFRSSRALSAHMAQVHGPGKFKCKICREALNTADERKLHYLIRHPGQHPFECNQCGKSFQYKSSLYMHKQEHLPNKQSYTCNFCKKVFAKKDSFREHLLIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCERTFADKGACTSHARTHSKTQSYGCMYCGQTFVQKSKLTYHIRKHTGENLETCSVCSKIFTSACSLREHMKIHTLNKQSVKCPLCDRKYQDERYMLRHLRTSHTQGHFTCPLCRKSLTSAVGLRHHVITHSPLKTYKCQICPKGYSARKSIVKHLRRRHGLKGTEINIRDFYKRLDPRECQLGLDEELMTSIFGPPKQIVNQILFRNFVNVNRGLDLTKKPEEVPVEEQIEQPTEKVRSEENSEDTSESTEIKQADKPIKQEVDDSEGNEDLEPTDFVSVKIEPMDDESSEYII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01359103;
90% Identity: iTF_00858798;
80% Identity: -