Basic Information

Insect: Amorpha juglandis
Gene Symbol: -
Assembly: GCA_949126905.1
Location: OX421380.1:15819587-15821113[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00019 0.012 16.4 5.8 1 23 142 164 142 165 0.96

2 12 9.6e-05 0.006 17.4 0.0 2 23 183 204 182 204 0.97

3 12 0.0002 0.012 16.4 5.0 1 23 210 232 210 233 0.96

4 12 0.0016 0.1 13.5 2.4 1 23 240 262 240 262 0.98

5 12 8.1e-05 0.0051 17.6 1.9 1 23 268 290 268 290 0.96

6 12 2.3e-06 0.00015 22.5 0.4 2 23 297 318 296 318 0.97

7 12 6.9e-06 0.00043 21.0 2.8 1 23 324 346 324 346 0.99

8 12 4.7e-06 0.0003 21.5 0.8 3 23 354 375 352 375 0.96

9 12 1.6 98 4.1 0.3 6 23 382 399 380 399 0.73

10 12 0.00028 0.018 15.9 0.5 1 23 405 428 405 428 0.94

11 12 0.00071 0.045 14.6 1.1 1 23 434 458 434 459 0.96

12 12 3.2e-06 0.0002 22.0 2.1 1 23 465 488 465 488 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00019	0.012	16.4	5.8	1	23	142	164	142	165	0.96
2	12	9.6e-05	0.006	17.4	0.0	2	23	183	204	182	204	0.97
3	12	0.0002	0.012	16.4	5.0	1	23	210	232	210	233	0.96
4	12	0.0016	0.1	13.5	2.4	1	23	240	262	240	262	0.98
5	12	8.1e-05	0.0051	17.6	1.9	1	23	268	290	268	290	0.96
6	12	2.3e-06	0.00015	22.5	0.4	2	23	297	318	296	318	0.97
7	12	6.9e-06	0.00043	21.0	2.8	1	23	324	346	324	346	0.99
8	12	4.7e-06	0.0003	21.5	0.8	3	23	354	375	352	375	0.96
9	12	1.6	98	4.1	0.3	6	23	382	399	380	399	0.73
10	12	0.00028	0.018	15.9	0.5	1	23	405	428	405	428	0.94
11	12	0.00071	0.045	14.6	1.1	1	23	434	458	434	459	0.96
12	12	3.2e-06	0.0002	22.0	2.1	1	23	465	488	465	488	0.96

Sequence Information

Coding Sequence: ATGGATGCGAAAATATGCCGAATATGCCTACACAGTCCCGGCACAATAATGTTATTTGACCAACAAAAacaacattgtgataaaataatGAAGTGTGTGAACATAGTAATTTGTGACGATGATGGGTTTCCGGACTCCATGTGCGCAGACTGTGCTCAGGAGCTGACCATTGCTTATGAGTTTGTTATAAAATGCGAATCATCGGATAAGGCGTTACGGTCTTTATCCATAGAGCTGCAGGCGAAATCGGAAATCGATATCAAAGACGAGGAGGTAAAATTAGAAACCGCAGCCAATATACTCGACGAATCGTATGATGATTGGAATAGTGAATATCCTGAACAGAAACATATGGACAAATATGTTGAATTATCACATGAAAATCACGACGTAAACAACCAGATAAAACCAATAAAAACGCTGTACTCTTGCGACACTTGTGGCTGTATGTTCACACTTAAAAAAACTTTGAAGAAACATATAGACACTCATCATAAACTCAGACAAGTTTACGACAAAAAGCACAAGGTTAGGTCTGGACCTATTCAATGTGTAATTTGTGGCCTCATGGTTAAGAGCAGGTCTGCCATGGAAGCCCATATTAGAACACACACTGGAGAAAAACCGTTTACCTGTGATATTTGTCACATGAAATTTAGTATCAAAGGATCTCTAAAAAAGCACACTGAAACTCACCATTCAGATAGGGAGAGGAAGTTCACCTGTGAGACATGCGGGAGCAGGTTCTACCGAAAATGTGAAATAATAGCTCATGTAAGAAGACACACTGATGAGCGACCGTATGCTTGTAACTTGTGTACTAAGAGATTCCGTCAAATATCATCACTTATAAGGCACAAGTTTTCACATACTGGGGAGCGTCGACAGTCTTGTCCTATATGCCAAAAGTCATTCTATGATAAATCTGCTATACAGAAGCACATGTCCGTCCACAGCAATGAGAAGAAATACACCTGTCACCTCTGCAACAAGTCTGTCAAAAGTAAAAGTTCCCTTGTCACTCATTTAAAAATCCACTCCAATGAAAAACAAGTGATTTGTAACATCTGCAGCATGACATTCTCATTGAAAGGCAACCTTCAGACACATATGCGGAGGAAACACTCTGAAAAATCTGGGCAATGTACTGTGTGCATGAAAACATACCCAGATTTGGATGTGCATATGCGTAAACACACAGGAGAACGCCCATATGCATGTAAGATTTGTGACCAAGCTTATGCAACTCAACGCAGTCTGTCGTACCATATAATGTTCAAGCATGAGAATGCGGATAAGTTCAAGTGTTCAATAGGGGAGTGTACAAAGACATTTCCGACAGGAAAGTTGCTGGAGATGCATTTACTGAAGCACCACACCAATCACACACCATATGTGTGCCCGCACTGCTCCAGAGGATTCTTTCGCACCAGTGACCTCACACGACATATGAAAGGCAGTCACATGGACCCCACCAAGACTAGGTTTAAAATGCAAGACCAAGTCATAATAGAGggaattaaatga
Protein Sequence: MDAKICRICLHSPGTIMLFDQQKQHCDKIMKCVNIVICDDDGFPDSMCADCAQELTIAYEFVIKCESSDKALRSLSIELQAKSEIDIKDEEVKLETAANILDESYDDWNSEYPEQKHMDKYVELSHENHDVNNQIKPIKTLYSCDTCGCMFTLKKTLKKHIDTHHKLRQVYDKKHKVRSGPIQCVICGLMVKSRSAMEAHIRTHTGEKPFTCDICHMKFSIKGSLKKHTETHHSDRERKFTCETCGSRFYRKCEIIAHVRRHTDERPYACNLCTKRFRQISSLIRHKFSHTGERRQSCPICQKSFYDKSAIQKHMSVHSNEKKYTCHLCNKSVKSKSSLVTHLKIHSNEKQVICNICSMTFSLKGNLQTHMRRKHSEKSGQCTVCMKTYPDLDVHMRKHTGERPYACKICDQAYATQRSLSYHIMFKHENADKFKCSIGECTKTFPTGKLLEMHLLKHHTNHTPYVCPHCSRGFFRTSDLTRHMKGSHMDPTKTRFKMQDQVIIEGIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00858799;
90% Identity: -
80% Identity: -