Ajug009647.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amorpha juglandis
Gene Symbol
-
Assembly
GCA_949126905.1
Location
OX421375.1:11802075-11829531[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.5e-05 0.006 17.4 2.2 1 23 452 474 452 474 0.97
2 20 0.0049 0.31 12.0 0.6 1 20 480 499 480 502 0.94
3 20 9.4e-05 0.0059 17.4 4.4 1 23 521 543 521 543 0.97
4 20 0.00011 0.0072 17.1 4.1 1 23 549 571 549 571 0.99
5 20 4.4e-05 0.0028 18.5 5.3 1 23 577 599 577 599 0.97
6 20 1.3e-05 0.00085 20.1 7.3 1 23 605 627 605 627 0.97
7 20 8.4e-07 5.3e-05 23.8 2.9 1 23 633 655 633 655 0.97
8 20 0.00012 0.0076 17.1 6.7 1 23 661 683 661 683 0.97
9 20 0.00012 0.0075 17.1 6.5 1 23 689 711 689 711 0.97
10 20 5.8e-07 3.6e-05 24.4 1.9 1 23 717 739 717 739 0.98
11 20 5.9e-05 0.0037 18.0 7.9 1 23 745 767 745 767 0.98
12 20 9.3e-06 0.00059 20.6 6.6 1 23 773 795 773 795 0.98
13 20 2.7e-05 0.0017 19.1 5.4 1 23 801 823 801 823 0.98
14 20 6.9e-05 0.0044 17.8 4.3 1 23 829 851 829 851 0.96
15 20 8.7e-06 0.00055 20.7 7.2 1 23 857 879 857 879 0.97
16 20 3.6e-06 0.00023 21.9 6.0 1 23 885 907 885 907 0.98
17 20 2e-05 0.0012 19.5 8.0 1 23 913 935 913 935 0.97
18 20 2.9e-06 0.00018 22.1 4.1 1 23 941 963 941 963 0.96
19 20 0.00064 0.04 14.8 0.3 1 23 970 992 970 992 0.96
20 20 0.29 19 6.4 5.6 1 23 999 1021 999 1021 0.99

Sequence Information

Coding Sequence
ATGAATCCAGAACACCATAATATAAATACGGGTGGTGGCCAGCCTCCGGGAAGTACAGAGTCTCAGAATCAAAGAGTGCAATCCACACAGCAACAGCAACAAAGCAATTTAACGCCCACCACGTCTGCAACTGACCTACGAGTGAACTCTGCTGCCGTGAACGTTGCTTTGTCTAGCGTTGCAAAATATTGGGtgtttacaaatttatttccCGGCCCGATTCCACAAGTGTCTGTCTACGGATTACCCACAGGAACTAGAATTGAGAATGGAAAACCAGTCCAGGATCTTGGACAAGCCCATGCCAGTATACTCAATGGTGATCCAAACATATTACTGGGACACCATGGAGGCCAACCGCAAGTTACGGTGTCGGCTTCGGGAGCTCAGCAGATACCAGTGTCGCAGATCATTGCCACACAGTCTGGACAATCGCATGAAGCGCTGGTGGGTCACGGGCAGCCGCAGGAGCTGGCGGGGCAGGCGGGAGGGGGTGCAGCGTCAGTCAGCGCGACACACTCCTCGCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGGGCATCATTCACAGCAACACATGATGCAACAGCAGCTAATGGCTACATCGCGGCAGGATCATCCAAATCAACAAATACAGTTAACAGTAAGTGAAGATGGCATAGTGACTGTGGTGGAGCCCGGCGGTGGCAAAATGGTAGATAAAGAGGAATTACACGACGCCATTAAGATACCGAGCGACCATGCGCTCACTGTGCATCAGTTACAACAGATTGTTGGACAGCAGGTGATCGACAGCGTGGTGCGCATCGAGCAGGCGACGGGCGAGCCCGCCAACATACTGGTGACGCACAACGCGGACGGCACCACGTCCATCGAGGCGAGCGCGGCCGAACACGCGCCGCACGCCACTCACGCCACTCACGCGACTCACGCCACTCACGCGACTCACGCCACTCATGCCTCACACGGCGCACACGCCTCACACGCGCCGCTCGTCAAGGACGAAAACAAACAACCCAAAATAGACGCACAGTTCGCCATACCCGCTGAGATCAAGGATATCAAGGGCATCGACTTGAAGACTGTAGGAGCAATGGGAATGGAGGGCGCAGTAGTGAAGATATCCGCCGGAGCATCAGAACATGATATGCACGCCATGTACAAAGTGAATGTCGAAGATCTGTCACAACTGTTGGCCTATCATGAAGTGTTTGGGAAATTGAATTCAGAAGGACAACCGCAACAACAGGCGAAGgtaataaatgaGGTTGAGGCAGAAGCAGGTACAAGCACCGCCATGTCGGAACCGGAATCTTCGCCCGGACATCATTCGTGCGACATTTGTGGGAAAATATTCCAATTTCGATATCAACTGATCGTCCACAGGCGTTATCACGGCGAGAGCAAGCCATTCACGTGTCAAGTGTGCGGCTCAGCGTTTGCCAACCCCGTCGAATTGTCGAGACACGGGAAATGTCATCTTGCCGGTGATCCGTCAGAGAGGCACGCGAAAAGATCGACGATAGACAAACCATACGCATGCACAGCttgtcataaaacattttcaAGGAAAGAACATCTTGACAATCATGTGAGGAGTCACACAGGAGAGACTCCATACAGATGTGAATTCTGTGCCAAAACGTTCACTCGTAAGGAGCACATGGTGAACCACGTGCGGAAACACACGGGAGAGACTCCGCATCGGTGCGACATCTGCAAAAAGAGCTTCACTAGGAAAGAGCACTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATATGCGGAAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCGCACACGAACGATACTCCATTCCGTTGCGAACTGTGCGGCAAGTCGTTTACAAGAAAGGAACACTTCACCAATCACATATTGTGGCACACGGGCGAAACACCGCACAGATGCGACTTTTGTTCGAAAACCTTCACGCGTAAAGAGCATCTACTAAACCACGTGAGACAACATACGGGCGAATCTCCCCATCGATGTAACTTCTGTTCGAAATCTTTCACGAGAAGAGAACATCTCGTCAACCATGTGAGGCAGCACACGGGAGAGACGCCTTTCCAGTGTGGATACTGCCCGAAAGCGTTCACCAGGAAGGACCACCTTGTGAACCACGTACGCCAGCACACGGGCGAGTCGCCGCACAAGTGTTCGTTCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGGCAACACACCGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCATTCACCAGGAAGGAGCACCTCACCAATCATATCAGACAGCACACTGGCGAAACTCCACACAAGTGCACGTTCTGCCCGCGCGCGTTCTCGCGCAAGGAGCACCTCAACAACCACGTGCGCCAGCACACCGGCGTCACGCCGCACGCCTGCACCTACTGCGCCAAGACCTTCACGCGCAAGGAGCATCTCGTCAACCACGTCAGACAACACACGGGCGAGACACCGTTTAAATGCACGTACTGCTCTAAATCATTTTCACGTAAAGAACACCTGACAAATCATATACACCTCCACACAGGAGAGACTCCACACAAATGCCCCTTCTGTACTAAAACATTCTCAAGAAAGGAGCATCTTACCAACCATGTTAGGATCCACACTGGCGAATCGCCGCACCGTTGCGAGTTTTGTCAGAAAACGTTCACTCGTAAGGAACACCTAACGAATCATATGAAACAGCACACGGGCGACACGGCGCATGCGTGCAAGATATGCTCCAAGCCATTCACGAGGAAGGAACATCTTGTTACGCATATGAGatcGCACAGTTGTGGAGAGAGGCCATACAGTTGTGGCGAATGCGGCAAGTCATTCCCACTGAAAGGAAACCTGCTGTTCCATGAGCGGTCACACAATAAAGGTGCGCGGCCGTACCGATGCGATATCTGTTCCAAAAACTTCTTATGTAAAGGTCATTTAGTATCTCACCGGCGTACGCACGCCGAAGCGGGTGAGAATCCGCCCAGCGGGGAGGCGCCGCCTGAGACTGAAGACTGCACGGATTGTAACAAATGCGTGAAGATCGAAGCCGAAGTACCCGAGAGAAAGCACGATATCAGAACTGCAGTTGAAAATAGGCCAGCTGAGAATAGTGTACCGCAACCTCCACAAACCAACACGGCTGTTATGCAAATTAACAATCAAGTTAATCAGCAGGTCCGGTCGGTGACTGCGACGAGTTCACAAGGCGTGACGACGGGCACGTTCACTCACACGGCGAGCACGCAGCATACGCAACACACGCAGCATCACGCCGGCACGCCCATACCCCACCATCCCGTCACCGTCAACTACTAG
Protein Sequence
MNPEHHNINTGGGQPPGSTESQNQRVQSTQQQQQSNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNILLGHHGGQPQVTVSASGAQQIPVSQIIATQSGQSHEALVGHGQPQELAGQAGGGAASVSATHSSHQQVPNNRVEFVQHHNIDMGHHSQQHMMQQQLMATSRQDHPNQQIQLTVSEDGIVTVVEPGGGKMVDKEELHDAIKIPSDHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNADGTTSIEASAAEHAPHATHATHATHATHATHATHASHGAHASHAPLVKDENKQPKIDAQFAIPAEIKDIKGIDLKTVGAMGMEGAVVKISAGASEHDMHAMYKVNVEDLSQLLAYHEVFGKLNSEGQPQQQAKVINEVEAEAGTSTAMSEPESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPSERHAKRSTIDKPYACTACHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFSRKEHLNNHVRQHTGVTPHACTYCAKTFTRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHIHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDTAHACKICSKPFTRKEHLVTHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKGARPYRCDICSKNFLCKGHLVSHRRTHAEAGENPPSGEAPPETEDCTDCNKCVKIEAEVPERKHDIRTAVENRPAENSVPQPPQTNTAVMQINNQVNQQVRSVTATSSQGVTTGTFTHTASTQHTQHTQHHAGTPIPHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_00429225;
80% Identity
-