Basic Information

Insect: Amorpha juglandis
Gene Symbol: -
Assembly: GCA_949126905.1
Location: OX421381.1:8797705-8814749[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00011 0.0069 17.2 0.1 3 23 130 150 129 150 0.97

2 18 9.9e-07 6.2e-05 23.6 1.2 1 23 156 178 156 178 0.99

3 18 6.2e-06 0.00039 21.1 2.7 1 23 184 206 184 206 0.99

4 18 4.1e-06 0.00026 21.7 2.6 1 23 221 243 221 243 0.98

5 18 0.00021 0.013 16.3 0.3 1 23 258 280 258 280 0.98

6 18 5.6e-05 0.0036 18.1 3.1 1 23 295 317 295 317 0.98

7 18 3.9e-07 2.5e-05 24.9 1.5 1 23 332 354 332 354 0.99

8 18 0.00017 0.011 16.6 2.8 1 23 360 382 360 382 0.98

9 18 1.2e-05 0.00078 20.2 2.1 1 23 388 410 388 410 0.99

10 18 0.04 2.5 9.1 1.8 1 23 417 439 417 439 0.98

11 18 6.6e-07 4.2e-05 24.2 2.3 1 23 445 467 445 467 0.99

12 18 0.046 2.9 8.9 1.8 1 23 474 496 474 496 0.98

13 18 2.7e-06 0.00017 22.2 1.5 1 23 502 524 502 524 0.99

14 18 0.00052 0.033 15.1 0.7 1 23 531 553 531 553 0.99

15 18 2.7e-06 0.00017 22.3 1.8 1 23 559 581 559 581 0.98

16 18 0.0022 0.14 13.1 0.3 1 20 587 606 587 609 0.93

17 18 4.2e-05 0.0027 18.5 1.4 2 23 616 637 615 637 0.96

18 18 3.3e-06 0.00021 22.0 1.3 1 23 643 666 643 666 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00011	0.0069	17.2	0.1	3	23	130	150	129	150	0.97
2	18	9.9e-07	6.2e-05	23.6	1.2	1	23	156	178	156	178	0.99
3	18	6.2e-06	0.00039	21.1	2.7	1	23	184	206	184	206	0.99
4	18	4.1e-06	0.00026	21.7	2.6	1	23	221	243	221	243	0.98
5	18	0.00021	0.013	16.3	0.3	1	23	258	280	258	280	0.98
6	18	5.6e-05	0.0036	18.1	3.1	1	23	295	317	295	317	0.98
7	18	3.9e-07	2.5e-05	24.9	1.5	1	23	332	354	332	354	0.99
8	18	0.00017	0.011	16.6	2.8	1	23	360	382	360	382	0.98
9	18	1.2e-05	0.00078	20.2	2.1	1	23	388	410	388	410	0.99
10	18	0.04	2.5	9.1	1.8	1	23	417	439	417	439	0.98
11	18	6.6e-07	4.2e-05	24.2	2.3	1	23	445	467	445	467	0.99
12	18	0.046	2.9	8.9	1.8	1	23	474	496	474	496	0.98
13	18	2.7e-06	0.00017	22.2	1.5	1	23	502	524	502	524	0.99
14	18	0.00052	0.033	15.1	0.7	1	23	531	553	531	553	0.99
15	18	2.7e-06	0.00017	22.3	1.8	1	23	559	581	559	581	0.98
16	18	0.0022	0.14	13.1	0.3	1	20	587	606	587	609	0.93
17	18	4.2e-05	0.0027	18.5	1.4	2	23	616	637	615	637	0.96
18	18	3.3e-06	0.00021	22.0	1.3	1	23	643	666	643	666	0.97

Sequence Information

Coding Sequence: ATGTTCGAACAACAGATCAAGGCTGAGCCTATGAGCTTTTACACCCCTCATCCACACGTACACTCCGGTCCCCCGACAATAATCCGTTCGGATTCAAACCAAGGGATCATCAGCATGCATCACCAACACCACCAAGAGGATTCAAAAGACAGCCTTATAGTGCAACAACAAGTACAACATCAACAAGATCTTATGGAACAACACCAACAACAGGAATTGCAACAAGACGATGAGttgAGCTTTAAAGGTATGGACGATGAAGGCGTTGATATGGATATGGATGGCCGTCAATGTTCCCAGgGTATGGGCGTGGACCTGGGTTCAGTACAAACTAAAATGGAAGTCGCAAACGGAGGTCAGTCAGCACCACGATCTAAACCACAGGCTTGTAAGGTCTGCGGCAAAGTACTATCGTCCGCTTCATCATATTACGTCCACATGAAACTTCATTCTGGAAACAAGCCTTTCCAATGCACGGTATGCGACGCGGCATTTTGTCGCAAACCGTACTTGGAAGTGCACATGCGCACGCACACGGGCGAGCGCCCCTTCCAATGCGATCTTTGCCTGAAGCGATTCACACAAAAGTCCAGTCTCAATACGCACAAACGCGTCCATACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACATACGGAGGAACACAAACGCGCGCTGCTGGCTAAGGAACGACCCTACCAGTGCGGCATCTGCCTAGTGAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGaagtccagcctgggacgacaTGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGTGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACACAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACTTGGAGATTCACACGCGCACCCACACCGGCGAGCGACCCTATCAGTGCGACATCTGTCTCAAGCGCTTCACACAGAAATCCAGTCTCAACATACACAAGCGGACGCACTCAGTGCAGGGGCGACCCTTCCAGTGCCTGCAGTGTCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATTCACAACCGCACGCACACCGGCGAGCGGCCCTACCAATGTGACGTCTGCCTCAAGAGATTCGCGCAAAAATCTACACTCAACATACACAAAAGAACGCACACAGTGCAAGGTCGTCCGTACCAATGCATGGAGTGCCCGGCCGCGTTCACATGCAAGCCGTACCTGGAGATACACATGCGCACGCACACCGGCGAACGTCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCTCGCAGAAATCCACGCTCAACATTCACAAACGCATTCATACCGGGGAACGTCCATACGCATGTGATATTTGTCAGAAACGCTTTGCTGTAAAGAGCTATGTAACAGCTCATAGATGGTCACACGTGGCGGACAAGCCGCTGAACTGCGACCGGTGCTCGATGACGTTCACGTCCAAGTCCCAGTTCGCGTTACACATCCGCACGCACTCCGCCGGCTCCTGCTACGAGTGCAGCGTCTGCGGCCGGAGCTTCGTTAGGGACAGTTATTTAATAAgACACCACAACCGTGTCCACCGCGAGAACCACAGTAACGTGTCGGCGAACAGCATCGGCACCATCAACAGTGTCGCGACCAACACGAACAATTCCAATAGCAACTACGACTCGCCCGGCGTTTGTGACTTaagcTTTGTGCCAATGGTGAATCGTTACATGACATCGCAGGGTACACAGGTCTCGATGCAGGACACGCAGAGTAAAATGTCAGCGATGTCACCGCAATCCATCGCGTCTATTTCATCGCCTCCACCCTCACACACCCCTACGCCACAACCCCAGATGTCAGGTCAGATGCATCTTGCAGACTGA
Protein Sequence: MFEQQIKAEPMSFYTPHPHVHSGPPTIIRSDSNQGIISMHHQHHQEDSKDSLIVQQQVQHQQDLMEQHQQQELQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDLGSVQTKMEVANGGQSAPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGICLVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFSQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010401;
90% Identity: iTF_00007324;
80% Identity: -