Ajug000415.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421365.1:4249376-4253042[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.054 3.4 8.7 0.8 1 23 30 52 30 52 0.98 2 31 0.086 5.5 8.1 0.3 2 23 80 102 79 102 0.94 3 31 0.00094 0.059 14.3 1.8 2 23 123 145 122 145 0.96 4 31 7.1e-05 0.0045 17.8 2.2 1 23 150 173 150 173 0.97 5 31 2.3e-05 0.0014 19.3 2.1 1 23 177 200 177 200 0.97 6 31 0.31 20 6.3 4.4 2 21 203 222 202 225 0.93 7 31 2.3 1.4e+02 3.6 0.3 2 19 231 248 231 250 0.93 8 31 0.012 0.77 10.8 2.6 1 23 297 320 297 320 0.93 9 31 0.28 18 6.5 0.2 2 23 349 371 348 371 0.91 10 31 0.00017 0.011 16.6 1.1 1 23 393 416 393 416 0.93 11 31 2.3e-06 0.00015 22.5 1.0 1 23 421 444 421 444 0.95 12 31 1.5e-05 0.00095 19.9 3.7 1 23 450 473 450 473 0.91 13 31 0.00018 0.011 16.6 0.2 2 23 479 501 478 501 0.93 14 31 0.00029 0.018 15.9 2.7 1 23 505 528 505 528 0.97 15 31 0.061 3.8 8.6 0.7 2 23 535 556 534 556 0.96 16 31 0.026 1.6 9.7 2.3 1 23 562 584 562 584 0.96 17 31 0.00015 0.0095 16.8 3.0 1 23 627 649 627 649 0.96 18 31 0.27 17 6.5 0.0 2 20 677 695 676 696 0.90 19 31 0.004 0.25 12.3 1.4 1 23 719 742 719 742 0.96 20 31 0.0002 0.013 16.4 0.5 1 23 747 770 747 770 0.96 21 31 0.011 0.69 10.9 2.2 1 23 775 798 775 798 0.96 22 31 0.00026 0.017 16.0 0.3 2 23 801 823 801 823 0.97 23 31 0.097 6.1 7.9 2.2 1 20 829 848 829 850 0.94 24 31 0.53 34 5.6 0.8 1 23 904 927 904 927 0.93 25 31 0.00026 0.016 16.0 0.1 2 23 1000 1022 999 1022 0.94 26 31 3.3e-05 0.0021 18.8 0.6 3 23 1029 1050 1028 1050 0.94 27 31 0.19 12 7.0 7.0 2 23 1055 1076 1054 1077 0.93 28 31 0.0048 0.31 12.0 2.6 1 23 1082 1105 1082 1105 0.97 29 31 1.6e-05 0.001 19.8 5.0 1 23 1109 1132 1109 1132 0.97 30 31 0.00099 0.062 14.2 0.5 3 23 1140 1160 1139 1160 0.97 31 31 3.1e-05 0.0019 18.9 0.7 1 23 1166 1188 1166 1188 0.98
Sequence Information
- Coding Sequence
- ATGCACAGTGCAAATTATCACAGAAGGAGGAACCTACAAATATTATTCAACAATACCTCACTGATACCTTTCAAATGGCGTATGAAATATATGTGTTTTTACTGTGGCAATGATTTAGATTCATATAATGATCTTAAAATTCATACTAAAAGTCATGGCTTTTGTTCTGATCGCGATCGCGCCATTCGTCTCGTTAAATCAGCCGAAAGCGAAGTTAAGATTGATGTTTCCGATGTGTCTTGCGATCTCTGTAACGAATGCTTTCCAAATTTAGTGGAAATCGTATCCCATTTGGTCACTAAACACAACTTGCCTTACAACAAAGAAGTTGATTTAAACATAGCAACGTACAGGTTATTTGATTTGAAGTGTTTGTCGTGCGACGAAACCTTTAAATATTTCAGGCACTTAGTCATTCACATGAACACTATTCATCCTACTAATTGCTTTTCTTGTTCAGATTGCGGTCAAAATTTTAATAAGCTAAGGGATTTACGTCACCATGTTAGGGTGCAACATAGAAGTAGTTATGCTTGTCCAAAATGTTCGGAAACGTTCGCTTCTAATTCAGAATTACAACATCACAAAAAAAAGTCTCATGTGTCCACTTGCAACATTTGTTTTAAGACATTTTCCTCGGATAGCAAACGGCTCAGTCATATGAAATGTAATCATAAGATTGATGGCGCCGAGTGCGGATTCTGTCATAAGGTCATGACGACTAATCAAGGGTTTTTAAGGCATGCAGCTCAATGCACTGCCACAAAAATATGTGACACTATTATAGTTGACGATGACCAAAAGCAATCAGTTAAAGAAATACGAAATGATATAGCTTGCATTTTGAACATCTCAACTGCTAtaccttttaaatattttatgaataaatttagATGTTTCTACTGTTCAAAAGATTTTGTCAAATGTGACGCTCTAAGGGACCACACGTCTGCAGAACATCCCCACTGTGATATCGGCATTAAGTCTCTGAAGCTACGCCATAGATACGAAGGAATTAGAATCAAAGTAGACACAACTTCACTCTCTTGTAAAGTGTGTTTTCAAAGTGTAAACAATTTGGAAACCTTGTTCGAACATTTGATCGACGAACACAAAACTAGGTTCGATAAATCCGTAGGTGATCATATGCAAGAGTTTAAATTGATAGAGGAAAACTTCGCATGCCCATACTGTGGGAAGGTTTATCGATATTTTGGTTTGCTTCTCAGACATGTGTGTGAGACGCACACTGACAATAAATTCATATGCACATACTGCGGGAAGTCTTTCAGAACCACTCCCAACTTGCGATCTCATATATTCAGTTGGCATAATAATATGCCTAGGCATAAGTGCGATTATTGTAATCGTGTGTTCACAACTAAAAGCAGCTTAAAAGTACATTTGGGACATGTACACGGCAGCAAGGTGGTCCGGTGCGTCGAATGTCCAGAGATGTTCACCACACAGTATTGGATGCGTCGCCATATGTTAGACACGCATGGAGCGGGTCACAAGTGCTCTTATTGCGGCAGACAGTTTGTGAAAAATTCTGGAATGGTGAACCACGTCAGACGGTTTCACTTCAAAGAAAAGAATGTCGAATGTACAGTCTGCTTTGAAAGGTTCTTCGACACACAACGGCTGAAGATCCACATGGTGAAACATGTCGGCGAGAGGAACTTCCATTGCGATATATGCGGCAAAAAATTTCTTTGGAAAAAGAATCTTAGAGGCCACATGTCTTCACATATAAAAAACAGCAACAATGAATATCCGCCAGGCCCGTATGAGGGCTGTACGTCTGAGCGTCGGCGGAAAAACTTGAGAGTTATCTTCAACCATACGACTGTGATGCCATTCAAATGGCGCGGGAAGTATCTGTGTTTCTATTGCGGCAAGAGCTATACGGTGTACAGCGAGTTTAAAAAGCACACCAAGTCACATGGCGACTGCAATACGAAGGACTACGCTCTGAGAATGATCAAAGGCAGTCACATAGAGATAAAAATTGATGTTTCTGAAATCGTTTGTAATATATGCAATGAGCCTTTTGACAGATTCGATGATATTGTCGATCATCTGATATGTAAGCATAAATTAGAGTATGACAAGAAGGTAGATATACCCTACCAGGAGTATAGATTAGCAGATTTTCGATGTTTGCACTGCGACGAACAGTTCTCTTACTTCGGATATTTGGTAAACCATGTTAACAATGCGCATCCGCAGAACAGTTTCATATGCGACGAGTGCGGTgtcagttttaataaaaaacgagATTTGGCGGTACATTTCAGAAATTACCATCGTCAAGGAGGATATCCTTGCgatcaatgtcttttaaatttCGATACATTCCATACTTTACGTAGGcatcaaaataatatacattaccGGCAGTGTAACAGTTGTGGTTTACGTTTTGCGTCTCTCACCCTCTTGCAGAAGCATATAAATGTCGACCACCCCGACAATGGTAGTTATAAGTGCAACTACTGCTCCAAGGAACTACACTCATCTCAAGGTTTAAACCAACATAAGAGTAAGTGCAAAGTGAAGTTAATCACTCAGATCGAACCTAGTAATTCGGCTACGCCAATAGAAACTATCGAAGCGAGAAAGAATTTGAATCTCAAACAAATGAGACAGAATATTCAATGTATTTTGAATATGTCAACTGCAACTCCATTCAAGTTTTTTTCTAAGTATACCTGTTTTTATTGTTCTTCAAAATATGTAGAGTTTGAGGAGTTAAGAAATCATACCGCATTGGAGCATCCAGTGTGCGATCTTAAGTCTAAATATATGAGCAAGTGTAAAGGCGAAAGAGTATCAGTTAAGATAGACATATCCGTGCTTGCCTGCAAGCTGTGCTGTCTTCCAATGTTAGATTTGAACGTACTTACAGATCATTTGATATCAGAACACAGGGCTAATTACGATAAGTCAATAACTGGATGTTTGGAACCATTCAGGATTGTGAAAGATAACATCCCCTGTCCGTTATGTGCAACAGTGTTTCGATACTTTAGTACGCTCCAACGTCATATGAATGCTGCTCATAGCAATAATAACAGAATATGCGATTTCTGTGGTAAGAGTTTCCGAAATGTGACGAATCTCAAAGTCCATATTTCGTACACACATACAGGTACATGTGAATGCCATATATGCGGTGCTAAGTACCAGAATCAGTGGTGTCTCGCCCGTCATAAGGCGAAGCACCACGATGTCAAAGATTACAAGTGTCCAAAATGTGCGGAGATGTTCCATTCCCAGTATCAGAGACAGAAGCATCTAATCAAAGTGCACGATGAAGGCCACAAGTGTACGTATTGCGGGAGAATGTTTACGCGCAATTCGTTTATGAAGGATCATATACGTAGAACGCATTTGAAAGAGAAAAATGTTGCATGTTCGGTGTGCAATGAAAAGTTTTTCGACAACTACCTTCTGAGGCTACATATGGTTAAGCACGAGGGCGAAAGGAAGTTCACCTGCGAGGTATGTGGCAAGGCGTTCTTGAGGAGGAGTAATCTTAATTCACATAAGGAAATGCACAAGAAGTACGGCCATGTATAG
- Protein Sequence
- MHSANYHRRRNLQILFNNTSLIPFKWRMKYMCFYCGNDLDSYNDLKIHTKSHGFCSDRDRAIRLVKSAESEVKIDVSDVSCDLCNECFPNLVEIVSHLVTKHNLPYNKEVDLNIATYRLFDLKCLSCDETFKYFRHLVIHMNTIHPTNCFSCSDCGQNFNKLRDLRHHVRVQHRSSYACPKCSETFASNSELQHHKKKSHVSTCNICFKTFSSDSKRLSHMKCNHKIDGAECGFCHKVMTTNQGFLRHAAQCTATKICDTIIVDDDQKQSVKEIRNDIACILNISTAIPFKYFMNKFRCFYCSKDFVKCDALRDHTSAEHPHCDIGIKSLKLRHRYEGIRIKVDTTSLSCKVCFQSVNNLETLFEHLIDEHKTRFDKSVGDHMQEFKLIEENFACPYCGKVYRYFGLLLRHVCETHTDNKFICTYCGKSFRTTPNLRSHIFSWHNNMPRHKCDYCNRVFTTKSSLKVHLGHVHGSKVVRCVECPEMFTTQYWMRRHMLDTHGAGHKCSYCGRQFVKNSGMVNHVRRFHFKEKNVECTVCFERFFDTQRLKIHMVKHVGERNFHCDICGKKFLWKKNLRGHMSSHIKNSNNEYPPGPYEGCTSERRRKNLRVIFNHTTVMPFKWRGKYLCFYCGKSYTVYSEFKKHTKSHGDCNTKDYALRMIKGSHIEIKIDVSEIVCNICNEPFDRFDDIVDHLICKHKLEYDKKVDIPYQEYRLADFRCLHCDEQFSYFGYLVNHVNNAHPQNSFICDECGVSFNKKRDLAVHFRNYHRQGGYPCDQCLLNFDTFHTLRRHQNNIHYRQCNSCGLRFASLTLLQKHINVDHPDNGSYKCNYCSKELHSSQGLNQHKSKCKVKLITQIEPSNSATPIETIEARKNLNLKQMRQNIQCILNMSTATPFKFFSKYTCFYCSSKYVEFEELRNHTALEHPVCDLKSKYMSKCKGERVSVKIDISVLACKLCCLPMLDLNVLTDHLISEHRANYDKSITGCLEPFRIVKDNIPCPLCATVFRYFSTLQRHMNAAHSNNNRICDFCGKSFRNVTNLKVHISYTHTGTCECHICGAKYQNQWCLARHKAKHHDVKDYKCPKCAEMFHSQYQRQKHLIKVHDEGHKCTYCGRMFTRNSFMKDHIRRTHLKEKNVACSVCNEKFFDNYLLRLHMVKHEGERKFTCEVCGKAFLRRSNLNSHKEMHKKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01010594;
- 90% Identity
- iTF_01010594;
- 80% Identity
- -