Amar009845.2
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- Rreb1
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000325.1:3125497-3128423[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00042 0.054 14.9 0.4 2 23 255 276 254 276 0.96 2 15 7.1e-06 0.00092 20.5 2.0 1 23 369 392 369 392 0.97 3 15 0.01 1.3 10.5 1.2 1 21 399 419 399 420 0.93 4 15 0.024 3.1 9.4 1.3 1 23 429 451 429 451 0.93 5 15 6.6e-05 0.0085 17.4 1.3 2 23 459 481 458 481 0.96 6 15 0.00033 0.043 15.2 3.5 1 23 488 510 488 510 0.98 7 15 0.022 2.8 9.5 0.3 2 21 537 556 536 557 0.94 8 15 0.005 0.65 11.5 4.6 1 23 605 628 605 628 0.98 9 15 0.013 1.6 10.2 0.2 2 23 666 688 665 688 0.94 10 15 0.0002 0.026 15.9 0.8 2 23 720 742 719 742 0.95 11 15 0.00031 0.04 15.3 0.3 1 23 756 778 756 778 0.95 12 15 0.00043 0.056 14.9 3.0 1 23 784 806 784 806 0.99 13 15 3.8e-07 4.9e-05 24.5 1.7 1 23 812 834 812 834 0.98 14 15 0.00034 0.044 15.2 6.1 1 23 840 862 840 862 0.95 15 15 0.0004 0.052 15.0 0.2 1 23 868 892 868 892 0.91
Sequence Information
- Coding Sequence
- ATGGCGCTTAATAGGATTTGTAGAACTTGCGATTTATCTAATTCCGCAGAGATATTTCAACTGAATTCATGTCCTAAAAAATATGGCGGCAAGATGCTCATGGATTTGTTAAAAGAAGTAACTAAAATTGATATTGGAAAAGATCACAAAGAAAAGTTGCCACAGTTCATTTGCTGCACTTGCGTTCGAAAGCTACAAAATGCCtatgattttgttattcaaGCACatgaagcaaacaaacaaatgatggATTTTCTGAATGGCATTAATACAGAATGCCTGCAAGAAGTTCCAATGGAGTATTGCAATGAACAATTATTGGAGATAAAGTTGGAAGAAGGCAGTTACGAAGAGTcaattccaaaaaatataacttatTTGAGTGATCAGAGCAAATTagatattaaaacaaatacatcAGATGATGAGAGAAATGTTAATCAAACAATGGATCCTTTAGTTATGAGTAAAAGTTTGAAAAACACTGCGAAACGAGGAAAGGAAATCATTGGTGATGATACTGTAAGCTCCgaTGAACTTGATGAATTACCATTACAACAGCgaaaactcaaacaaaaacaaacgattattttaaaaacgaCAAATGATGATAGGCAATTGTGCAAGGCTGACTTAGTTAcccatttaaaaaaacatcaaaaagaaaaaatgaaagtaaaagtaaTAGCTACTCTTCCGGAACCCAAGCAAGCCAAAGAAGTTGATGTCAACATGTGCAGGCCACATGGATGCAAACTTATTCAGTGCATGATCTGTCAAATAAACTTTACGAAAATCTCTGATTTAcgaaaacatttaaatgagCACCCGGTCATTTCTTCGTTTACAAAACGATCCAACGAATCATTGCAAGATATAGCCAAccgtttttatatttactttaaagaTGCAACTGAAGAAaatttgataatgaaaattcgCAATGATTTAAGCAACAAAatgtttgataatttttacTCAATAACTAATCAATCTGGATATGAATTAAGTTTATCGAGTTCAGAGACTGAAAGTGAAGTTGCATCTCAATCGGAATcggaatcagaatcagaagaGCCCAAATGTAAAGAGTCAAGAAAGAGCTACAATTGTGAATtgtgcaataaaaaatttattcggAAATATCAACTTTTTGATCACCAAAGGCTTGAACATGAATGGAGTGAAGCTGTTCATGTTTGCAGACGATGCGATGCAAgatttgtaaataaacaacTACTGGAGCATCATTATGAAACACAATGCAAGAATTCACATAAGCGTTTCATATGTAAGAAGTGTCCTCTTAGATTTCGATGGAAACGCAATTTATTAACACATTATGATGACCATAGGAAGAACaaaGAAACATTACAATGTTCGAAATGCAATCGAAGCTACGAtgacaaaaaatcatttactaTACACATGCTGAAAGCGCATGCGGATGGTTCTAAAATGTTCTCTTGCCAATGGTGTAGTCGAACATTTTATCGGAGGGATTATatgttaaaacatttaaagcgCCATGGTATTAGAGAAAAAGATCTGCCTCTCGCTGAAATACTTGTTATAGCAACTTCAAATCCCAATGGTGATAAAATCATCCAATGCAAAGTTTGTAATCTACAATTTGAACGAATTTGTGATTTAAAAGAACACATTCTATTGGAGTTGAAATTAAACTTATCGAAACATCAAAGCTACGAATCACTAACCAATTACACAATTACAAATGAATCTGGTTTTGAATTACATCTCGATGATTCGGAAACTGATGAAGAAGATTCAGTTGAGAGTAAGCAGATGTCTTACAAATGTGAGATTTGCCAGGTTCAATGTAAGCGCAAGTTTGAAATGTTTCAACATCAAAGATCAATGCATCCATTCGAACATTTGCCACATTCTTGCGAGAagtgtatttttaaatgtgtttcaaagaaTATACTTGATCATCATCGGAATACTCAATGTTTTAATGAGCAGAAGCAGTTATCATGTGAGAAAtgttcttataaatttatgtggcCTGAAAATTTGGCACGGCATATGTTGCTACAGCATCCAAATGGAATAGATAGCAAAATTTCTCCAGAAGAGtctaacataaataattgcaAGGAGGTTGTTGGAGAAACAGATGCGACTACCCAACTGCAGTGTCCACATTGTGATAAATCTTACCAATTGCAAGGACGCCTTAATAATCATATACGAGATGTACATATTGATGGCGATcgcaagaaaaaagaaaatgaaagaaaatttctttgttcCTTGTGTGGAAAGGAATTACAATCAGCTGCTTCCTTGGACAGACATATGCGAAGACATACTGGGGATAAACCATTTAAATGTGATATGTGCGAAATGGCATTTACAAGAAACTGTGAAATGTTACTGCATCAGAGGAAACACACGGGCGAGAAGCCTTATCATTGCACTGTTTGTGGTAAAGATTTTGCCCGCTCTGACAAACTCAAACGGCACATGTTAATACATAGTGGGTTAAAGCCACACAAATGTTCAGTATGTGGTAAATGCTATCGACAATCTAAAGATTTAAAACTGCATTTTCTACAACATACTGGAGAAACGCATTTTGAATGTAATATATGTGGCGACCGGTTCATACAGAATGTCACTTTGGAGAAGCACCGAATGATGCGTGGACATTTTAGATAA
- Protein Sequence
- MALNRICRTCDLSNSAEIFQLNSCPKKYGGKMLMDLLKEVTKIDIGKDHKEKLPQFICCTCVRKLQNAYDFVIQAHEANKQMMDFLNGINTECLQEVPMEYCNEQLLEIKLEEGSYEESIPKNITYLSDQSKLDIKTNTSDDERNVNQTMDPLVMSKSLKNTAKRGKEIIGDDTVSSDELDELPLQQRKLKQKQTIILKTTNDDRQLCKADLVTHLKKHQKEKMKVKVIATLPEPKQAKEVDVNMCRPHGCKLIQCMICQINFTKISDLRKHLNEHPVISSFTKRSNESLQDIANRFYIYFKDATEENLIMKIRNDLSNKMFDNFYSITNQSGYELSLSSSETESEVASQSESESESEEPKCKESRKSYNCELCNKKFIRKYQLFDHQRLEHEWSEAVHVCRRCDARFVNKQLLEHHYETQCKNSHKRFICKKCPLRFRWKRNLLTHYDDHRKNKETLQCSKCNRSYDDKKSFTIHMLKAHADGSKMFSCQWCSRTFYRRDYMLKHLKRHGIREKDLPLAEILVIATSNPNGDKIIQCKVCNLQFERICDLKEHILLELKLNLSKHQSYESLTNYTITNESGFELHLDDSETDEEDSVESKQMSYKCEICQVQCKRKFEMFQHQRSMHPFEHLPHSCEKCIFKCVSKNILDHHRNTQCFNEQKQLSCEKCSYKFMWPENLARHMLLQHPNGIDSKISPEESNINNCKEVVGETDATTQLQCPHCDKSYQLQGRLNNHIRDVHIDGDRKKKENERKFLCSLCGKELQSAASLDRHMRRHTGDKPFKCDMCEMAFTRNCEMLLHQRKHTGEKPYHCTVCGKDFARSDKLKRHMLIHSGLKPHKCSVCGKCYRQSKDLKLHFLQHTGETHFECNICGDRFIQNVTLEKHRMMRGHFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061333;
- 90% Identity
- iTF_00062173;
- 80% Identity
- -