Amar009843.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amiota mariae
Gene Symbol
-
Assembly
GCA_035041805.1
Location
JAWNKV010000325.1:3117047-3119956[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.3 9.5e+02 1.6 0.2 12 23 208 219 208 219 0.91
2 16 0.024 3.1 9.4 0.4 2 23 255 276 254 276 0.96
3 16 2.9e-05 0.0038 18.5 1.9 1 23 367 390 367 390 0.97
4 16 0.01 1.3 10.5 1.2 1 21 397 417 397 418 0.93
5 16 0.024 3.1 9.4 1.3 1 23 427 449 427 449 0.93
6 16 6.6e-05 0.0085 17.4 1.3 2 23 457 479 456 479 0.96
7 16 0.00033 0.043 15.2 3.5 1 23 486 508 486 508 0.98
8 16 0.022 2.8 9.5 0.3 2 21 535 554 534 555 0.94
9 16 0.005 0.64 11.5 4.6 1 23 603 626 603 626 0.98
10 16 0.015 1.9 10.0 0.5 2 23 664 686 663 686 0.94
11 16 0.0002 0.026 15.9 0.8 2 23 718 740 717 740 0.95
12 16 1.7e-05 0.0022 19.3 0.2 1 23 754 776 754 776 0.95
13 16 0.00028 0.037 15.4 1.9 1 23 782 804 782 804 0.99
14 16 3.7e-07 4.8e-05 24.5 1.7 1 23 810 832 810 832 0.98
15 16 0.0017 0.22 13.0 7.1 1 23 838 860 838 860 0.97
16 16 6.4e-06 0.00083 20.6 0.2 2 23 867 888 866 888 0.97

Sequence Information

Coding Sequence
ATGGCGCTTAATAGGATTTGTAGAACTTGCGATGTAACTAATTCCGCAGAGATATTTCAACTGAATTCATGTCCTAAAAAATATGGTGGAAAGATGCTTCTGGATATGTTAAAGGAAGTAACTAAAATTGATATTGGAAAAGATCACAAAGAAAAGTTGCCACAGTTCATTTGCTGCACTTGTGTCCGTAAACTTCAAAATGCCtatgattttgttattcaaGCACatgaagcaaacaaacaaatgatggATTTTCTGAATGGCATTAATACAGAATGCCTGCAAGAAGTTCCAATGGAGTATTGCAATGAACAATTCTTGGAGATAAAGTTGGAAGAAGGCAGTTACGAAGAGTCAATTCCAAAAAATACAACTTATTTGAGTGATCAGAGCAAATTagatattaaaacaaatacatcAGATGATGAGAGAAATGTTAATCAAACAATGGATCCTTTAGTTATGAGtaaaagtatgaaaaacacTGCAAAACGAGGAAAGGAAATCATTGCTGATGATACTGTAAGCTCCgaTGAACTTGATGAATTACCTTTACAACAGCGAAAACTCAAACAAAAGCAatcgaatattttaaaaaagacgAATGATGACAGACAATTGCGCAAGGCTGACTTAGTTACCCATCTAAAAACACATCAAGAAGAGAAATCGAAATCAAAAGTAACAGCTACTCTTCCGGAACCCAAGCAAGCTAAAGAAGTTGATGTCAACCTATGCAGGCCGCATGGATGTAAACTTATTCAGTGCatgatttgtttaaaaaagtttatgaAGATTCCTGATTTAcgaaaacatttaaatgacCACCCAGTTATATTGTCGTTTTCAGAACGCCCCAACGAATCAATTCAGGATATAGCCAACCGTTTTTATAATTACTTTAAAGAAGCAACAgagaaaaatttgataaagaaaattcatgaAGATTTGAGCGATAAAaaatttgacaatttttaCTCAATAACTAATCAGTCTGGatatgaattaaatttgtCGAGTTCAGAGACTGAAAGTGAAGTTGCATCTCAATcggaatcagaatcagaagaGCCCAAATGTAAAGAGTCAAGAAAGAGCTACAATTGTGAAttgtgcaataaaaaatatattcggAAATATCAACTTTTTGATCACCAAAGGCTTGAACATGAATGGAGTGAAGCTGTTCATGTTTGCAGACGATGCGATGCAAgatttgtaaataaacaacTACTGGAGCATCATTATGAAACACAATGCAAGAATTCACATAAGCGTTTCATATGTAAGAAGTGTCCTCTTAGATTTCGATGGAAACGCAATTTATTAACACATTATGATGACCATAGGAAGAATAAAGAAACATTACAATGTTCGAAATGCAATCGAAGCTACGAtgacaaaaaatcatttactaTACACATGCTGAAAGCGCATGCGGATGGTTCTAAAATGTTCTCTTGCCAATGGTGTAGTCGAACATTTTATCGGAGGGATTATatgttaaaacatttaaagcgCCATGGTATTAGAGAAAAAGATCTGCCTCTCGCTGAAATGCTTGTTATAGCAACTTCAAATCCCAATGGTGATAAAATCATCCAATGCAAAGTTTGTAATCTACAATTTGAACGAATTTGTGATTTAAAAGAACACATTCTATTGGAGTTGAAATTAAACTTATCGAGACATCAAAGCTACGAATCACTAACCAATTACACAATTACAAATGAATCTGGTTTTGAATTACATCTTGATGATTCGGAAACAGATGAAGAAGATTCAGTTGAGAGTAAGCAGATGTCTTACAAATGTGAGATTTGCCAGGTTCAGTGTAAGCGCAAGTTTGAAATGTTTCAACATCAAAGATCAATGCACCGATTTGAACATTTACCACATTCTTGCGAGAagtgtatttttaaatgtgtttcaaagaatatacTTGTTAATCATCGGAGTACTCAATGTTTTAATGAGCAGAAGCAGTTATCTTGTGAGAAatgttcttttaaatttatgtggCCTGAAAATTTGACACGGCATATGTTACTACAGCATCCAAACGAAGTAGATAGCAAAATTTCTTCAGAAGAGtctaacataaataattgcaAGGAGGTTGTTGGAGAAACAGATGCGACTGTCCAGTTGCAGTGTCCACATTGTGATAAATCTTACCAATTACAAGGACGCCTTAATAATCATATACGAGATGTACATATTGATGGCGATcgcaagaaaaaagaaaatgaaagaaaatttctatGTTCTTTGTGTGGAAAGGAGTTACGATCAGCTGCTAACTTAGTTACACATATGCGAAGACATACTGGAGATAAACCATTTAAATGTGATATGTGCGAAATGGCATTTCCTCGACATTCCGATATGTTACTGCATCGGAGGAAACACACGGGCGAAAAGCCTTATCATTGCACTGTTTGTGGTAAAGATTTCGCTCGCTCTGACAAACTCAAACGACACATGTTGATACACAGTGGTTTAAGGCCGCATAAGTGcacattctgtgaaaagtGTTATCGACAGTCTAAAGATTTAAAACTGCATCTTTTACAACATACTGGCGAAACACATTTGGAATGTAATATATGTGGCGAGCGGTTCATACAGAATGTCACTTTGGAAAAGCACAGAATGATGCATGGACACTTTTGA
Protein Sequence
MALNRICRTCDVTNSAEIFQLNSCPKKYGGKMLLDMLKEVTKIDIGKDHKEKLPQFICCTCVRKLQNAYDFVIQAHEANKQMMDFLNGINTECLQEVPMEYCNEQFLEIKLEEGSYEESIPKNTTYLSDQSKLDIKTNTSDDERNVNQTMDPLVMSKSMKNTAKRGKEIIADDTVSSDELDELPLQQRKLKQKQSNILKKTNDDRQLRKADLVTHLKTHQEEKSKSKVTATLPEPKQAKEVDVNLCRPHGCKLIQCMICLKKFMKIPDLRKHLNDHPVILSFSERPNESIQDIANRFYNYFKEATEKNLIKKIHEDLSDKKFDNFYSITNQSGYELNLSSSETESEVASQSESESEEPKCKESRKSYNCELCNKKYIRKYQLFDHQRLEHEWSEAVHVCRRCDARFVNKQLLEHHYETQCKNSHKRFICKKCPLRFRWKRNLLTHYDDHRKNKETLQCSKCNRSYDDKKSFTIHMLKAHADGSKMFSCQWCSRTFYRRDYMLKHLKRHGIREKDLPLAEMLVIATSNPNGDKIIQCKVCNLQFERICDLKEHILLELKLNLSRHQSYESLTNYTITNESGFELHLDDSETDEEDSVESKQMSYKCEICQVQCKRKFEMFQHQRSMHRFEHLPHSCEKCIFKCVSKNILVNHRSTQCFNEQKQLSCEKCSFKFMWPENLTRHMLLQHPNEVDSKISSEESNINNCKEVVGETDATVQLQCPHCDKSYQLQGRLNNHIRDVHIDGDRKKKENERKFLCSLCGKELRSAANLVTHMRRHTGDKPFKCDMCEMAFPRHSDMLLHRRKHTGEKPYHCTVCGKDFARSDKLKRHMLIHSGLRPHKCTFCEKCYRQSKDLKLHLLQHTGETHLECNICGERFIQNVTLEKHRMMHGHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00061333;
90% Identity
iTF_00062176;
80% Identity
-