Amar009842.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amiota mariae
Gene Symbol
-
Assembly
GCA_035041805.1
Location
JAWNKV010000325.1:3111989-3114932[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0048 0.62 11.6 2.9 5 23 217 235 216 235 0.95
2 16 0.0072 0.93 11.0 0.7 2 23 271 292 270 292 0.96
3 16 7.1e-06 0.00092 20.5 2.0 1 23 385 408 385 408 0.97
4 16 0.01 1.3 10.5 1.2 1 21 415 435 415 436 0.93
5 16 0.024 3.2 9.4 1.3 1 23 445 467 445 467 0.93
6 16 7e-05 0.0091 17.3 1.1 2 23 475 497 474 497 0.96
7 16 0.00033 0.043 15.2 3.5 1 23 504 526 504 526 0.98
8 16 0.022 2.8 9.5 0.3 2 21 553 572 552 573 0.94
9 16 0.005 0.65 11.5 4.6 1 23 621 644 621 644 0.98
10 16 0.0056 0.73 11.4 0.4 2 23 682 704 681 704 0.94
11 16 0.00024 0.03 15.7 0.8 2 23 729 751 728 751 0.95
12 16 0.0028 0.36 12.3 0.3 1 23 760 782 760 782 0.95
13 16 0.011 1.4 10.4 1.6 1 23 788 810 788 810 0.99
14 16 9.7e-07 0.00013 23.2 4.9 1 23 816 838 816 838 0.98
15 16 4e-05 0.0052 18.1 5.4 1 23 844 866 844 866 0.97
16 16 0.00024 0.031 15.7 0.2 2 23 873 894 872 894 0.97

Sequence Information

Coding Sequence
ATGGCGCTTAACAGGATTTGCAGAACTTGCGATGTAGCAAATTCCACTAAGACATTTCAACTGAATTCATGTCCTAAAAAATATGGCGGTAAGATGCTTCTGGATTTGTTAAAAGAAGTCACTAAAATTAATATTGGAAAAGATCACAAAGAAAAGTTGCCACAGTTCATTTGCTGCACTTGTGTCCGTAAACTACAAAATGCCtatgattttgttattcaaGCACatgaagcaaacaaacaaatgatggATTTTCTGAATGGCATTAATACAGAATGCCTGCAAGAAGTTCCAATGGAGTTTTGTACTGAACAATTATTGGAGATAAAGTTGGAAGAAGGCAGTTACGAAGAGTCAATTCCAAAAAATACAACTTATTTGAGTGATCAGAGCAAATTagatattaaaacaaatacatcAGATGATGAGAGAAATGTTAATCGAACAATGGATCCTTTAGTTATGAATAAAACTATGAAAAACTCTGCGAAACGACCAAAGGAAATCATTGCTGATGATACTGTAAGCTCCgaTGAACTTGATGAATTACCATTACAACAGCgaaaactcaaacaaaaacaatcgaATATATCAAAAACGACGAATAATGATAAGCAATTGTGGAAGACTGAGCAGTTGACTCGTAATACTTGTAAGCGAACATTTTCAAAGAAGAATCACTTAGTTACTCATCTAAAAAtacatgaagaagaaaaaacgaaaacaaaagaaacagcTACTCTTCCGGAATTTAAGCAATCTAAAGAAGTTGATATCAACCTATGCAGGCCGCATGGCTGCAAACTAATTCAGTGCATGATTTGTCTAAACAAGTTTACGAAAATCTCTGATCTAcgaaaacatttaaatgagCACCCGGTCATTTCTTCGTTTACAAAACGCTCCAACGAATCATTGCAAGATATAGCCAACCATTTCTATAATTACTTTAAAGATGCAactgaagaaaatttaataacgAAAATTCGCAAAGACTTAAGCgacaaaatgtttaataatttttattcaataactAATCAATCTGGATATGAATTAAGTTTATCGAGTTCAGAGACTGAAAGTGAAGTTGCATCTCAATCGGAATCGGAAACAGAATCAGAAGAGCCCAAATGTAAAGAGTCAAGGAAGAGCTACAATTGTGAATtgtgcaataaaaaatttattcggAAATATCAACTTTTTGATCACCAAAGGCTTGAACATGAATGGAGTGAAGCTGTTCATGTTTGCAGAAGATGTGATGCTAgatttgtaaataaacaacTACTGGAGCATCATTATGAAACACAATGCAAGAATTCATATAAGCGTTTCATATGTAAGAAGTGCCCTCTTAGATTTCGATGGAAACGCAATTTATTAACACATTACGATGACCATAGGAAGAACaaaGAAACAGTACAATGTTCGAAATGCAATCGAAGCTACGAtgacaaaaaatcatttactaTACACATGCTGAAAGCGCATGCGGATGGTTCTAAAATGTTCTCTTGCCAATGGTGTAGTCGAACATTTTATCGGAGGGATTATatgttaaaacatttaaagcgCCATGGTATTAGAGAAAAAGATCTGCCTCTCGCTGAAATGCTTGTTATAGCAACTTCAAAACCCAATGGTGATAAAATCATCCAATGCAAAGTTTGTAATCTACAATTTGAACGAATTTGTGATTTAAAAGAACACATTCTATTGGAGTTGAAATTAAACTTATCGAGACATCAAAGCTACGAATCACTAACCAATTACACAATTACAAATGAATCTGGTTTTGAATTACATCTTGATGATTCGGAAACAGATGAAGAAGATTCAGTTGAGAGTAAGCAGATGTCTTACAAATGTGAGATTTGCCAGGTTCAGTGTAAGCGCAAGTTTGAAATGTTTCAACATCAAAGATCAATGCACCGTTTTGAGCATTTGCCATATTCTTGCGAGCAGTGTGTTTTTAAATGTGTTTCAAAgaaTATACTTGATCATCATCGGAATACTCAATGTTTTAATGAGCAGAAGCAGTTATCATGTGAGAAAtgttcttataaatttatgtggcCTGAAAATTTGACACGCCATATGTTGCTACAGCATCCAAACGAAGTAGATAGCAAAATTTCTCCAGAAGAGGAGGTTATTGGAGAAACCGATGCGACTGTCCAGTTGCAGTGTCCACATTGTGATAAAACATACCAATTACAAGGACGACTTAATAATCATATACGCGATGtgcataaaagaaaagatttggaaagaaaatttctttgttcCTTGTGTGGAATGGAGTTGCAATCAAATGCGTACTTAGTTACACACATGCGAAGACATACTGGAGATAAACCATTCAAATGTGATATGTGTGAAATGGCCTTTCCACTACATTATGAAATGTTGCTGCATCGGAGAAAACACACTGGCGAAAAACCTTATCATTGCACTGTTTGTGACAAATGTTTTGCCCGATCTGACAAACTCAAACGGCACATGTTAATACACAGTGACTTAAAACCACACAAATGCACAGTATGTGGTAAATGCTATCGTCaatcaaaagatttaaaaCTGCATCTTCTACAACACACTGGCGAAACACATTTAGAATGTAATATATGTGGCGACCGGTTCATACAGAATGTCACTTTAGAAAAGCATCGAATGATGCATGgacatttttga
Protein Sequence
MALNRICRTCDVANSTKTFQLNSCPKKYGGKMLLDLLKEVTKINIGKDHKEKLPQFICCTCVRKLQNAYDFVIQAHEANKQMMDFLNGINTECLQEVPMEFCTEQLLEIKLEEGSYEESIPKNTTYLSDQSKLDIKTNTSDDERNVNRTMDPLVMNKTMKNSAKRPKEIIADDTVSSDELDELPLQQRKLKQKQSNISKTTNNDKQLWKTEQLTRNTCKRTFSKKNHLVTHLKIHEEEKTKTKETATLPEFKQSKEVDINLCRPHGCKLIQCMICLNKFTKISDLRKHLNEHPVISSFTKRSNESLQDIANHFYNYFKDATEENLITKIRKDLSDKMFNNFYSITNQSGYELSLSSSETESEVASQSESETESEEPKCKESRKSYNCELCNKKFIRKYQLFDHQRLEHEWSEAVHVCRRCDARFVNKQLLEHHYETQCKNSYKRFICKKCPLRFRWKRNLLTHYDDHRKNKETVQCSKCNRSYDDKKSFTIHMLKAHADGSKMFSCQWCSRTFYRRDYMLKHLKRHGIREKDLPLAEMLVIATSKPNGDKIIQCKVCNLQFERICDLKEHILLELKLNLSRHQSYESLTNYTITNESGFELHLDDSETDEEDSVESKQMSYKCEICQVQCKRKFEMFQHQRSMHRFEHLPYSCEQCVFKCVSKNILDHHRNTQCFNEQKQLSCEKCSYKFMWPENLTRHMLLQHPNEVDSKISPEEEVIGETDATVQLQCPHCDKTYQLQGRLNNHIRDVHKRKDLERKFLCSLCGMELQSNAYLVTHMRRHTGDKPFKCDMCEMAFPLHYEMLLHRRKHTGEKPYHCTVCDKCFARSDKLKRHMLIHSDLKPHKCTVCGKCYRQSKDLKLHLLQHTGETHLECNICGDRFIQNVTLEKHRMMHGHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00061333;
90% Identity
iTF_00062189;
80% Identity
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