Amar009854.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amiota mariae
Gene Symbol
-
Assembly
GCA_035041805.1
Location
JAWNKV010000325.1:3158946-3161708[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.6e-05 0.0059 17.9 1.5 1 23 167 189 167 189 0.99
2 16 0.037 4.7 8.8 0.7 2 23 224 245 223 245 0.95
3 16 0.0023 0.29 12.6 4.2 1 23 332 355 332 355 0.95
4 16 0.0025 0.32 12.5 0.5 2 22 363 383 362 383 0.96
5 16 0.094 12 7.5 3.4 1 23 392 415 392 415 0.91
6 16 7.9e-06 0.001 20.3 0.4 2 23 422 444 421 444 0.96
7 16 4.4e-05 0.0057 18.0 4.4 2 23 452 473 451 473 0.97
8 16 0.0059 0.76 11.3 1.3 2 21 500 519 499 520 0.93
9 16 0.026 3.4 9.3 3.3 1 23 572 595 572 595 0.98
10 16 0.0031 0.4 12.2 1.4 1 23 632 655 632 655 0.97
11 16 0.0024 0.32 12.5 1.0 2 23 692 714 691 714 0.95
12 16 0.00069 0.09 14.2 0.2 1 23 728 750 728 750 0.95
13 16 1.4e-05 0.0019 19.5 1.1 1 23 756 778 756 778 0.98
14 16 1.6e-07 2.1e-05 25.6 2.4 1 23 784 806 784 806 0.99
15 16 8.6e-05 0.011 17.1 4.6 1 23 812 834 812 834 0.97
16 16 0.0098 1.3 10.6 1.8 1 23 840 864 840 864 0.91

Sequence Information

Coding Sequence
ATGGAGCATGGCGATAAGCTGCCTCAGCATGTCTGTGAAAGTTGTGCTAAAAATCTTCAAATGgcatatgattttgttttacaagtacgcgaaacaaataaaaaactactATTGAGTTGCCTTAAAAGTTTGGACATGGATAATCATCTAGATAACGACGATTATTATATACTAAACACAGATTGTTTATTGGAAACACCAATGCAAGCAAATACCGAGGATATTATTGATGTTAAAGTAGAAGTTGATGCAGATATACTTGGTCAAACAATCATCAAGGAATCACAGACACAACAATTaaactcaattcaaaaatCAGCAGATCCATTGACTGTGCCTTCCATCGAATCAAATTTGGATCAGGATTCCATTAATAATACAAGCGATGATGAAGATTTCGATGAGTTACCATTAGCTGAGCGAAAAATAAGGAAGGAGATGAAATTCGTGACAAAACCATTAAGTACAAATGAGAACACAGACCAACAGCAACACACTTATAAATGTGATAAATGCAGTAAAACTTATTTGCGCCCAAAAAATCTGCTTGCACACCTTAAAACCCACAACGAACACAGTAAACCTCTGAGATCGACGAATCTTTGCGAGCGTCGAAAAGTTAGAGAATTAGATATTAATCTCTGCAAAACAAATGGTTGCAAATTAATTCAGTGTATGATTTGCTTACGAAAGTTTAACAAATTCATTGAACTTAGAAACCATTTGAGCGAACATGCTACGAATCTtagttttaatgattttcatgGTTCATTACAAGATATCGCAGATTCATTTTATGCTGATACAAAAGATATTACAGAGAATATCCTTATCGATCGCATCATTAAAGATCTCGCAAGTGGTTCCTATGCTCGATTTTATTCGATAACCAATGAGTCTGGCTATGAACTTAGTTTGGATAGTTCAGAGACTGATAGTGATGAGGACGTGGaaacaataaatcaaagtTCCAGAACAGAGAAAgctaaaaattattgttgtgaaATATGTAAGAATAGTTATAGACGCAAATATCAACTTCTAGAACACCAACTACAAAAACACCAATGGTTAAATGTTCATAATAAATGTGCACGCTGTGATGCACGATTCGTTAGTAAAGACTTATTAGCACATCATCAAAAAACCCTTtgcaaaaatacacaaaagcGTTTCCTATGTAATAAATGCCCACAAAGATTCCGTTGGAAGCACAATTATCAGGCACATAATAGAGATTATCACAATAAGAAACAAACGTTGTCCTGTAGTGAATGTGATCGCACCTATGATGATAAGAAATCATTGACTATACACATGCTTACAATTCATACAGACAAATCGCAATTGATGCCCTGTCATTGGTGTAATAGAAAATTCTATCGTAAAGATTATCTTTTTAAACATCTCAAGCGTCATGGTCTGCAAGAGAAAGATTTACCACTTGCTGAAACATTAATTGCGGCAACCGCAAGATCCAatggcaataaaaatattgaatgcaAAGTATGTAATAGACATTTCCAAAAGATTTCGGAATTACGTCACCATTTgcttaatgaaataaaaagaaatatgtcagctcacaaaaattatgaatcaGTGGCGAATTATTCTATAACAAACGAAGCTGGTTATGAGTTACATATTGAAGATTCGGAGACAGATAacgaatcatcatcattattaccaaCAATGAGTATGCAATCAACTTATACATGTGATCTCTGCCAAGTTCAATGTAGacgaaaatttgaaataatgcAGCATCAACGTTCAATGCATCGATTTGAAGTTCTACCTTATGCCTgcgaaaaatgtatttttaagagTGTCTCCAAAAACTTAATGGATTATCATAAGCGGACACAATGtctaaatgaagaaaagaaattcgaATGCAACAAGTGTAGTTACAAGTTTATGTGGTCAACAAATCTTGAGATGCATATGCGTTTGCAACATTTCGATgctgaacaaatgaatgcattACCAACTAAAGAAGACAATTCaatgaatatacaaaaatcagaATGTAATGAACAACTTTCAATTCCTACGCCTAAATTGCTACAATGTCCACATTGTGATCGCACTTATTTACTGCAATCATTTCTAAATAATCACATCAGAGATGTTCATGCTGAAGGAAGTCGCAAAAAGAAGGAAGCTGAACGAAAATTCTTATGTTCCCTTTGTGGACTGGAAGCCCAGACGTCATCTAATTTGGTTATTCATATGCGACGGCATACTGGAGAGAAGCCATTTAAATGCGATGATTGTGACATGGGTTTTATTCGTCATTCTGAATTGATAATCCACAAACGGCAACACACTGGCGAAAGACCCTATCAATGTACTGTTTGTAGCAAAGATTTTACACGTTCAGATAAATTGAAACGACACATGTTAACCCACAGTGGTTTGAAACCATTCAAATGTTCATATTGTGAAAAAACATATCGATACTCAAAAGATCTAAAAGTCCATCTATTGCATCACACTGGTGACACACCATTTCAATGTGGCACATGTGGTGATCGTTTCATGCATAACACTGCATTGGAAAAACATCGCATGATGCGTAGACATTTTGATGAAACTaaattatctatctatacataa
Protein Sequence
MEHGDKLPQHVCESCAKNLQMAYDFVLQVRETNKKLLLSCLKSLDMDNHLDNDDYYILNTDCLLETPMQANTEDIIDVKVEVDADILGQTIIKESQTQQLNSIQKSADPLTVPSIESNLDQDSINNTSDDEDFDELPLAERKIRKEMKFVTKPLSTNENTDQQQHTYKCDKCSKTYLRPKNLLAHLKTHNEHSKPLRSTNLCERRKVRELDINLCKTNGCKLIQCMICLRKFNKFIELRNHLSEHATNLSFNDFHGSLQDIADSFYADTKDITENILIDRIIKDLASGSYARFYSITNESGYELSLDSSETDSDEDVETINQSSRTEKAKNYCCEICKNSYRRKYQLLEHQLQKHQWLNVHNKCARCDARFVSKDLLAHHQKTLCKNTQKRFLCNKCPQRFRWKHNYQAHNRDYHNKKQTLSCSECDRTYDDKKSLTIHMLTIHTDKSQLMPCHWCNRKFYRKDYLFKHLKRHGLQEKDLPLAETLIAATARSNGNKNIECKVCNRHFQKISELRHHLLNEIKRNMSAHKNYESVANYSITNEAGYELHIEDSETDNESSSLLPTMSMQSTYTCDLCQVQCRRKFEIMQHQRSMHRFEVLPYACEKCIFKSVSKNLMDYHKRTQCLNEEKKFECNKCSYKFMWSTNLEMHMRLQHFDAEQMNALPTKEDNSMNIQKSECNEQLSIPTPKLLQCPHCDRTYLLQSFLNNHIRDVHAEGSRKKKEAERKFLCSLCGLEAQTSSNLVIHMRRHTGEKPFKCDDCDMGFIRHSELIIHKRQHTGERPYQCTVCSKDFTRSDKLKRHMLTHSGLKPFKCSYCEKTYRYSKDLKVHLLHHTGDTPFQCGTCGDRFMHNTALEKHRMMRRHFDETKLSIYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00061344;
90% Identity
-
80% Identity
-