Acom007141.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amiota communis
Gene Symbol
-
Assembly
GCA_037043315.1
Location
JBAMAV010000566.1:1783382-1786353[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00021 0.025 15.9 0.9 1 23 217 239 217 239 0.98
2 16 0.033 3.9 9.0 2.3 2 23 274 295 273 296 0.94
3 16 0.00083 0.099 14.0 3.3 1 23 382 405 382 405 0.95
4 16 0.0026 0.31 12.4 0.5 2 22 413 433 412 433 0.96
5 16 0.061 7.2 8.1 3.4 1 23 442 464 442 464 0.94
6 16 8.5e-06 0.001 20.2 0.4 2 23 472 494 471 494 0.96
7 16 4.7e-05 0.0056 17.9 4.4 2 23 502 523 501 523 0.97
8 16 0.0066 0.78 11.2 0.5 2 21 550 569 549 570 0.93
9 16 0.044 5.2 8.6 2.6 1 23 621 644 621 644 0.97
10 16 0.0022 0.27 12.6 1.1 1 23 681 704 681 704 0.97
11 16 0.0026 0.31 12.4 1.0 2 23 742 764 741 764 0.95
12 16 0.00043 0.051 14.9 0.2 1 23 778 800 778 800 0.95
13 16 6.4e-05 0.0076 17.5 1.2 1 23 806 828 806 828 0.98
14 16 2e-07 2.4e-05 25.4 2.0 1 23 834 856 834 856 0.98
15 16 0.0026 0.31 12.4 2.3 1 23 862 884 862 884 0.96
16 16 0.0079 0.93 10.9 0.5 1 23 890 914 890 914 0.91

Sequence Information

Coding Sequence
ATGTCTACAACATGTAGAACATGCGGATGTAATGGAAACAGTGAAACTGATTTTAGTGAACTCAAGAACAATATCagaattttttcttcaaacaaAATGCATAATCTGACCCTTTGGGATTTACTGTTTGAATTAGCACAAATTGGGCCAAACATGGAGCATGCTGATAAACTGCCTCAGCATATATGTCAAACTTGCGCCAAGAATCTCCAGATGgcatatgattttgttttgcaagTGCGCGAAACAAATACGAAACTATTGAGCTGTTTAAAAAGTTTAGACATGGATAATcttgacgatgatgacgattaTAACACACTAAACACAGATTGTTTATTGGAAACACCAATGCAAACGAATACCGAGGAAATTGTTCAAGTTAAAGTAGAAATTGAGGCAGACGTAATACTAGGACAAACAATCATCAAGGAATCACAGTCACAACAATTAAACTCAATTCAAAAATCAACAGATCCATTGACTGTGCCTTCTTTAGAAACAAAATTAGAACAAGATACCATAAAAAGTACGAGTGATGaAGATTTCGATGAGTTACCATTAGCTGAGCGAAAAATAAGAAAGCAGATCAAATTTGTGGCAAAACCTCCAAGTAAAAATATGTCCATTGAGCAACAGCAGCACACTTATAAATGTGATAAATGCAGTAAAACTTATTTGCGCCCAAAAAATCTGCTGGCACACCTTAAAGCCCACAATGAGCGCGGTAAGCCTCTGCGATCAAAGAATCTTTGCGAGCGTCGAAAAGTTAAAGAATTAGATATTAATCTATGCAAAGCAAATGgttgtaaattaattcaatGTATGATTTGCTTACGAAAGTTTAACAAATTCATGGAACTTAGAAACCATCTGAACGAACATCATACAAATATTACTGTTAATGATTTTCAGGGTTCATTGCAAGATATCGCAGATACATTTTATGCTGATACAAAAGATGTTACAGAGAAAATTCTTATCGATCGCATCATTAAAGATCTCACAAGTGGTTCCTATGCTCGATTTTATTCGATAACCAATGAGTGTGGTTATGAACTTAGTTTGGATAGTTCAGAGACTGATAGTGATGACGATCTGGAAACGGTAAATCTAAGTTTCAGAACAGAGAAAgctaaaaattattgttgtgaaatatgtaataatagcTATAGACGCAAATATCAACTATTAGAGCACCAACTACAAAATCACCAATGGTTAAATGTTCATAACAAATGTGCACGATGTGATGCACGATTCGTTAGTAAAGACTTATTAGCACATCATCAAAAAACCCTTtgcaaaaatacacaaaaacgTTTCCTATGTAATAAATGCCCACAAAGATTCCGTTGGAAGCACAATTATCAGGCACATAATAGAGATCACCGCAATAAGAAACAAACGCTGTCCTGTAGTGAATGTGATCGCACCTATGATGATAAGAAATCATTGACCATACACATGCTTACAATCCATACAGACAAATCGCAATTAATGCCCTGTCATTGGTGTAATAGAAAATTCTATAGGAAAGATTATCTTTTCAAGCATCTCAAACGTCATGGTCTGCGAGAAAAAGATTTACCACTTGCTGAAACATTAATTGCGGCAACCTCAAAATCCaatggcaataaaaatattgaatgcaAAGTCTGTAATAGACATTTCCAAAAGATTTCGGAATTACGTAGCCATTTgctaaatgaaataaaaataaatatgtcatctcatgaaaattatgaatcaGTTGCGAATTACTCTATTACAAATGAAGCTGGTTATGAGTTGCATATTGAAGATTCAGAGACAGATAACGAGGAGTCATCCTCATTAACAATGAGTGTACAATCAACTTATACATGTGATCTCTGTCAAGTTCAATGTAAacgaaaatttgaaataatgcAGCATCAACGTGCAATGCATCGATTTGAAGTTCTACCTTATGCCtgtgaaaaatgtatttttaagaGCGTCTCCAAAGACTTGATGGATTATCATAAGCGGACACAGTGtctaaatgaagaaaagaagttTGAATGCACCAAGTGTAGTTACAAGTTTATGTGGTCAACAAATCTTGAGGTGCATATGCGTTTGCAACATTTCGATGCTGATGAACTGAATGCTATACCaactaaagaaaacaattcaaaGAGTATACAAATGAATTACGAATGTAATGATCAACTTTTAATAACTAAGCCAAAATTGCTACAATGTCCGCATTGTGATCGCACTTATTTACTGCAATCATTTCTAAATAATCACATCAGAGATGTTCATGCTGAAGGCAATCGCAAAAAGAAGGAAGCTGAACGAAAATTCCTATGTTCGCTTTGTGGACTGGAAGCCCAAACATCATCTAATTTGATTATTCATATGCGACGGCATACTGGAGAGAAACCATTTAAATGTGATGATTGTGACATGGGTTTTATACGTCACACCGAATTGATAATCCACAAACGGCAACACACTGGCGAAAGACCCTATCAATGCACTGTTTGCAGCAAAAATTTTACACGTTCGGATAAATTAAAACGACACATGTTGATACACAGTGGTTTGAAACCattcaaatgtatttattgtgaAAAAACTTATCGATACTCAAAAGATCTAAAACTCCATCTGTTGCAGCACACTGGTGAGACACCATTTGAATGTGGCACATGTGGTGATCGATTCATGCAAAACACTGCATTGGAAAAACATCGCATGATGCGTAGACATTttgataaaactaaataa
Protein Sequence
MSTTCRTCGCNGNSETDFSELKNNIRIFSSNKMHNLTLWDLLFELAQIGPNMEHADKLPQHICQTCAKNLQMAYDFVLQVRETNTKLLSCLKSLDMDNLDDDDDYNTLNTDCLLETPMQTNTEEIVQVKVEIEADVILGQTIIKESQSQQLNSIQKSTDPLTVPSLETKLEQDTIKSTSDEDFDELPLAERKIRKQIKFVAKPPSKNMSIEQQQHTYKCDKCSKTYLRPKNLLAHLKAHNERGKPLRSKNLCERRKVKELDINLCKANGCKLIQCMICLRKFNKFMELRNHLNEHHTNITVNDFQGSLQDIADTFYADTKDVTEKILIDRIIKDLTSGSYARFYSITNECGYELSLDSSETDSDDDLETVNLSFRTEKAKNYCCEICNNSYRRKYQLLEHQLQNHQWLNVHNKCARCDARFVSKDLLAHHQKTLCKNTQKRFLCNKCPQRFRWKHNYQAHNRDHRNKKQTLSCSECDRTYDDKKSLTIHMLTIHTDKSQLMPCHWCNRKFYRKDYLFKHLKRHGLREKDLPLAETLIAATSKSNGNKNIECKVCNRHFQKISELRSHLLNEIKINMSSHENYESVANYSITNEAGYELHIEDSETDNEESSSLTMSVQSTYTCDLCQVQCKRKFEIMQHQRAMHRFEVLPYACEKCIFKSVSKDLMDYHKRTQCLNEEKKFECTKCSYKFMWSTNLEVHMRLQHFDADELNAIPTKENNSKSIQMNYECNDQLLITKPKLLQCPHCDRTYLLQSFLNNHIRDVHAEGNRKKKEAERKFLCSLCGLEAQTSSNLIIHMRRHTGEKPFKCDDCDMGFIRHTELIIHKRQHTGERPYQCTVCSKNFTRSDKLKRHMLIHSGLKPFKCIYCEKTYRYSKDLKLHLLQHTGETPFECGTCGDRFMQNTALEKHRMMRRHFDKTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00063022; iTF_00062163;
90% Identity
-
80% Identity
-