Amar016088.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amiota mariae
Gene Symbol
su(Hw)
Assembly
GCA_035041805.1
Location
JAWNKV010000361.1:1679784-1683071[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00083 0.11 14.0 1.6 1 20 147 166 147 168 0.94
2 12 2.7e-06 0.00035 21.8 0.3 3 23 219 240 217 240 0.93
3 12 0.012 1.6 10.3 0.2 1 23 246 268 246 268 0.95
4 12 6.7e-07 8.7e-05 23.7 2.5 1 21 275 295 275 296 0.95
5 12 1.9e-06 0.00025 22.3 1.0 2 23 308 329 307 329 0.96
6 12 9.4e-05 0.012 17.0 5.3 1 23 340 362 340 362 0.99
7 12 0.00098 0.13 13.7 0.6 3 23 370 390 368 390 0.97
8 12 5.5e-06 0.00071 20.8 0.8 1 23 396 418 396 418 0.99
9 12 9.1e-07 0.00012 23.3 1.9 1 23 424 446 424 446 0.98
10 12 2.4e-06 0.00031 22.0 0.6 1 23 450 472 450 472 0.97
11 12 0.033 4.2 9.0 0.4 1 20 483 502 483 507 0.88
12 12 0.00022 0.029 15.8 0.1 3 23 525 546 524 546 0.95

Sequence Information

Coding Sequence
ATGGGCGGTCGCCATCTTGAAAGCTTGGAACACACGCTTGCTATGAGTAAAACAGCAGTTGAACCAACTGCCACTGGCAGCGAAAGGCCCAAGCGTAATTCGGccataaaaatcttaaatgatgaaaagatTTCTCCCTTACCAGCTAAAGGTTCGACGCTCTCAATTGCAAAACCCAGATCGTCCGGATCTAAGAAGGGACAAGAGCATTATGTGCTACAAAGTGTCAAAAGTGAATCCAATAAAACGAATGGTGCAGGAACTGTTATTAGTttacatgatgatgacgacaccATCAACTTTGTGCTTGCCGAAAATGACGAAGAAAATGTCGCCATATCGAAGATCGGTCAACGAAGCGGCGAGATCACAGAAGAATTCCACATCAGTGGTGAGGAGGGCGATGGTGAGAACGATCGTGTCAAAGAAATCGTTGAGCATGTGTGTGGCAAATGCTACAAAACATTCCGTCGCGTCAAAAGTCTCATGAAGCATTTAGAGTTTTGTCGCTATGACAGTGGCTATCATTTGCGTAAGGCAGACATGTTAAAGAACTTGGAGAAAATCGAAAAGGATGCTGCCATTATGGAGAAGAAAGATATCTGCTTTTGTTGTAGTGAAAGCTATGATACATTTCATCTTGGACATATTAATTGTCCTGATTGTCCGAAATCATTCAAGTCGCAAGAAAGCTATGAGcgtcatatttttattacacattCAGAATTCCCCGACTATCCTTGTTCCATATGTAATGCAAAGTTGCGGAGCAACACTTTGTTAAAACTACACGAAGAGCAGCATAAGAATCGTGGAAAACCTTTTGCATGTAAAATTTGTGGTAAGGATTTTACTCGCTCTTACCATCTAAAACGCCACCAAAAGTATTCATCATGCTCAACCAATGAAAATGATACATTGAGCTGCAAGGTATGCGATAAGGTTTTCTATCGTTTGGATAATTTGCGTTCCCATTTAAAGCAACATATTGGAACGCAAGTTGCCAAGAAACCGGAATACATGTGTCATGTATGTAAGAACTGTTTCTACAGTTTGTCTACTTTAAACATACACATTCGAACACACACCGGTGAAAAGCCATTTGGCTGTGATTTGTGCGAAAAGAAGTTTTCAGCTTTGGTGGCACTAAAGAAACATCGTCGCTATCATACTGGAGAGAAACCATACACTTGCACTGTGTGTAATCAATCGTTTGCCGTCAAAGAAGTGCTCAATCGTCATATGAAACGTCATACTGGCGAACGTCCACATAAATGTGATATATGTGACAAGAGTTTCATACAAGCAACACAGTTGCGTACTCATGCAAAGACTCATCTAAGACCATTTGTCTGTCCAATATGCGATGAAAAGTTCAAAACCCAAAAACAATTAGATCGCCACGTCAAGGATCACTTACGCTCAAAACGCAGCAAGAAATTCACATTCGCATGCACTACATGTAAACTTACTTTCCGTGATGAACAACAGTTAGACGAACATAACGAGAAAGGTGAACACAAAGaaCCTGCTAAACGTATGAAACGTAACAGGGTCAGCGATCGCAGAGATTGTGCAATTTGCGATAAGATTTTCGATACTACAGATGATTTACGTAGTCATATTCTTCAAGTCCATGAATGTGATCCAGAAGACATATTTGGTGAAAAACCACCAGCAGCGAAGCAAGAGGAGGCGGCCAGTGATTCGTCGCCAAAAGCGAAACGCAGAACATTATCTAAAAAAGCATCATCACCAGTTGATTCTGCTGCGCCTTCTGGaagtaaattgatttcaaCGAATAAGGAAAATGGTTTAGTTGTACGCGAATTTCTTGTCGACGAAGTTCCAGCTGTTGGCTCAGGTTCACATCAAACTATTATATTCGAGAATGAAACGTATACTGTTATTCCAATAGACAACGATCCAGAAAACAATGAATCTAAACCCAGTGTTTCCAGTGAAGCTCAAAACAAAGTTTCACCGGctataaagaaagaacaacGCAAATCTTTGGCAGCCAGTTTAGCTGCTGCTATTGCAGACAATGAAGATGTTGAGTTAAGTGAAGATGAAAACTCAGAGGAGATGACAGAAGAAGACTTAAAACTTAAAGATAATGTAGCCAAATTATTGGATATGTTAGTCGATAATTCTACACTAAAGAAATTTGGTTGGCCTGGAACATCAGAAGAAATCGTTTTATGCAAAGTTATCGAAAATTGCGGCCACGAATTAtctgatgataatgaaagCTATCGTCAACTCGACTATGGAGGACGCATGCgtgaatatttgaaattattattcgAATTGGTGATACATAACGATTCCATTAAGGAATTGCTCAACAACTATACGATTGATGAAGTCATAGATTATGTTTTgggtgatgaagatgaagtaGATGATGGAGAAAACGGCGAAGGCGATGAGATTGgagatataaaagaaatagtaACTTAG
Protein Sequence
MGGRHLESLEHTLAMSKTAVEPTATGSERPKRNSAIKILNDEKISPLPAKGSTLSIAKPRSSGSKKGQEHYVLQSVKSESNKTNGAGTVISLHDDDDTINFVLAENDEENVAISKIGQRSGEITEEFHISGEEGDGENDRVKEIVEHVCGKCYKTFRRVKSLMKHLEFCRYDSGYHLRKADMLKNLEKIEKDAAIMEKKDICFCCSESYDTFHLGHINCPDCPKSFKSQESYERHIFITHSEFPDYPCSICNAKLRSNTLLKLHEEQHKNRGKPFACKICGKDFTRSYHLKRHQKYSSCSTNENDTLSCKVCDKVFYRLDNLRSHLKQHIGTQVAKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFGCDLCEKKFSALVALKKHRRYHTGEKPYTCTVCNQSFAVKEVLNRHMKRHTGERPHKCDICDKSFIQATQLRTHAKTHLRPFVCPICDEKFKTQKQLDRHVKDHLRSKRSKKFTFACTTCKLTFRDEQQLDEHNEKGEHKEPAKRMKRNRVSDRRDCAICDKIFDTTDDLRSHILQVHECDPEDIFGEKPPAAKQEEAASDSSPKAKRRTLSKKASSPVDSAAPSGSKLISTNKENGLVVREFLVDEVPAVGSGSHQTIIFENETYTVIPIDNDPENNESKPSVSSEAQNKVSPAIKKEQRKSLAASLAAAIADNEDVELSEDENSEEMTEEDLKLKDNVAKLLDMLVDNSTLKKFGWPGTSEEIVLCKVIENCGHELSDDNESYRQLDYGGRMREYLKLLFELVIHNDSIKELLNNYTIDEVIDYVLGDEDEVDDGENGEGDEIGDIKEIVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00062987;
90% Identity
-
80% Identity
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