Amar025446.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000611.1:474564-485460[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.8 1.4e+04 -4.0 3.4 230 271 123 163 108 193 0.57 2 4 0.46 8.2e+03 -3.3 1.2 242 274 274 306 269 319 0.61 3 4 6.1e-113 1.1e-108 364.1 26.4 1 299 345 643 345 644 0.90 4 4 0.18 3.2e+03 -1.9 4.1 216 245 669 697 647 717 0.50
Sequence Information
- Coding Sequence
- atgccCCCAAAACGTGGAAAGGGTAAAGCAGCAGCTACAACATCAACGCCGGCAGCTGCTGCTAAagagaaaacacaaaaacaaaaatcaacaagtGTGAAAACTAAGGAAGtagtggcggtggtggtggatAATAATGCCAGTATAAACAAAGTTGTGAAAACAAAAGGTGCAAATGAATCTTCTTCAACTGCTCCACCACTAGAAACAGTCTTGGTCCCTCtaccaccagcaccagcatCGCTAACATCAGAATCAAACACCGATGAAGTCATCgaagaatttcattttagtGATAGCGATCTACGTACCttagatgataatgatgatgatgatgataataatgaaattgactCAAGTAAAGTTGAtgataaaaacgaaaatattaaaaaagaaaatgcactCGCTAAGAATATTGAAAGCGCAAATAACCGAAacaagcacaacaacaacaacaatgacaattcATCAATTGATAACAATGATAAAGAGTCAATAAAAGataaagcaacaacaccaacaaaagataatgaaaataataataataatatagtagCTGACGACTCAAGTAATatttctgttgatgttgctattgatgatgatgatgattttatagggcaaaagaaaaataatatatcaattactcaaaatgatgatgatacaaaaGGCAAAAATGATATGCCTCCAGGCAATTTGGTTGTGTCGCCGACTGATagcggtgatgatgatgatcagcTGAAGCAACTATTATCACCATTTTGTCCAATTACACCCGGACGCATAGTGGATAccggtgatgataatgaagatcaTCTTGATCTTAATAAACAATTGGATtgtacaacaaatactaagaatgacaataatgatgacaatTCATCTTCAGCTGTTTtaacacataataaaaatgaaaatattaaagatcATGCAAATGATCATcgccatgatgatgattatgatgatgaatctGATTATTATGAAGAGCCTGAAGAAAAAGTATTAGCAAAATTTTTTGGAGTAACAAATCACATTgcCGAAGCCAGATTGGCAGCTCGTCGACAAGCACGCGCTGAAGCTCGGGAAATACGCATGCGTGAATTGGAGCGTCAACAAAAGGAACAAGAACAGAATGCAGATCGTGTATTTGATATGCATACATCTGTTGGTACTAATAATGATCCCTTAACTCGTACAACACGTCTGGGATCTGGTGTGCCAGCTGTTGGTGGTCTGTTGAATGCAACCCGCGTTGTTAATGCCAGCTCAATGTCATCACGAAGAAGTAGTGAAGATTCACTTGAAGAAGAGGGCAGAAGTCTAAGGGATATAAGACATGAATTAAAGgATGTTGAAGAACGATTTCGTAAAGCGATGATTGCAAATGCCCAATTGGATAATGACCGCGCCTCACAAACatttgaagtgaaactgctCAAAGACAAAATTGAAACGATGCAAGAATCATATGCGCAATTAGAACGTGAATTCAAAGAGAAATCACGTGATTATAATGCGCTCAAACGTAATCTAGATAGATTAACATTAGAGTTGAAACTGGTACAGGGTCAGCTTAGTGAACGTGACACACTCATTGCGGAACAGGGTCTAGTGATTGTTGCCATCGAGAATGTCGATCGCACAGATGCCAAGCGTGCTCTAGTCAGCGTAGAAAACGCGAATGTTTTGGCCTCAGTGCAGGGTTCATTAGaTGTACGactcaaaaaatttaatgaggAAAAACAGCAACTCGTTGGCGAGGTACAAAAATTGCAAGAGCAACTGGATGCCTACAAAAGCGAGGGCAAAGGTCGCGGCAATTTATCAAATGGTCCATTGGGGTCTGATGAAGATTATGAGGCTCAAAgagaagcaaacaaaatcatatcagactataaatataaattgcaaaaGGCTGAACAGGAAATCGCTAGTCTGCAAGCGAGTTTAGCACGTTCCGAAACGCAAGTCATACGGTATAAAAGTACGGCGGAAGCAGCAGAGAAAGCTGAAGCAGAACTTAAAGTAGAACGTAGGAAACTTCAACGTGAGAATCGAGAAGCAATGGAACGTCTGGAGGAGCTGGAAACAtcaaataatcatttattaaaacgTTTGGATAAATTGAAGAATGCAAAAAGTGCACTACTTAAAGATCTTTGA
- Protein Sequence
- MPPKRGKGKAAATTSTPAAAAKEKTQKQKSTSVKTKEVVAVVVDNNASINKVVKTKGANESSSTAPPLETVLVPLPPAPASLTSESNTDEVIEEFHFSDSDLRTLDDNDDDDDNNEIDSSKVDDKNENIKKENALAKNIESANNRNKHNNNNNDNSSIDNNDKESIKDKATTPTKDNENNNNNIVADDSSNISVDVAIDDDDDFIGQKKNNISITQNDDDTKGKNDMPPGNLVVSPTDSGDDDDQLKQLLSPFCPITPGRIVDTGDDNEDHLDLNKQLDCTTNTKNDNNDDNSSSAVLTHNKNENIKDHANDHRHDDDYDDESDYYEEPEEKVLAKFFGVTNHIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTSVGTNNDPLTRTTRLGSGVPAVGGLLNATRVVNASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTFEVKLLKDKIETMQESYAQLEREFKEKSRDYNALKRNLDRLTLELKLVQGQLSERDTLIAEQGLVIVAIENVDRTDAKRALVSVENANVLASVQGSLDVRLKKFNEEKQQLVGEVQKLQEQLDAYKSEGKGRGNLSNGPLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -