Acom007142.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- -
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010000566.1:1787899-1791008[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.9 3.4e+02 2.9 0.3 2 16 57 71 56 73 0.87 2 17 0.00044 0.052 14.9 1.9 1 23 261 283 261 283 0.99 3 17 0.044 5.3 8.6 5.8 2 23 291 313 290 313 0.96 4 17 0.064 7.6 8.1 0.4 2 23 349 370 348 370 0.96 5 17 2.7e-05 0.0032 18.7 2.2 1 23 458 481 458 481 0.97 6 17 0.042 5 8.6 1.6 1 21 488 508 488 509 0.94 7 17 0.02 2.4 9.6 3.8 1 23 518 540 518 540 0.98 8 17 1.6e-05 0.0019 19.4 0.8 2 23 548 570 547 570 0.96 9 17 0.0015 0.18 13.2 4.6 3 23 579 599 577 599 0.97 10 17 0.029 3.5 9.1 0.0 2 21 626 645 625 646 0.94 11 17 0.003 0.35 12.3 5.4 1 23 694 717 694 717 0.98 12 17 0.016 2 9.9 0.5 2 23 755 777 754 777 0.94 13 17 4.7e-06 0.00056 21.1 1.0 2 23 814 836 813 836 0.95 14 17 0.0017 0.2 13.0 0.3 1 23 850 872 850 872 0.95 15 17 0.0002 0.023 16.0 2.8 1 23 878 900 878 900 0.99 16 17 2.6e-07 3.1e-05 25.0 2.4 1 23 906 928 906 928 0.98 17 17 0.00012 0.014 16.6 4.9 1 23 934 956 934 956 0.98
Sequence Information
- Coding Sequence
- ATGCAATCGAAGAGAATTTGCAGAACCTGTAATGTCTCTGGTTCCATAGAgacttttaatttaaatacacGTCCTAAGAAATATCAAGGAAAGATACTTTTGGATATGTTGATAGAAGTAACTAATATTGATGTGAAAATGGAGTACACAGATAATTTTCCACAGTGCATATGTCGCATTTGCGATCGTAAGCTAAAAAATGCCtatgattttgttattcaaGCTCGTGATGCAAATTTAGAAATGCTAAATTATttcaaccaaaacaaagaaattcaGTCCAAAACCGAATGTTTGCAGGAGATTCCGATTGAAGTGTGTACTGAACAGTCAAacgaattaaatttaaaagaagaaccTTGCGAAATCGAATCCGGTAATGaggaaaataatgaagaatcATTGGATCCTCTagtaatgaatgaaattgtgaaaaatagtGAACTGAATCAACGAAGcgagaaaataaaagaaacaacgAGTTCCTCAAGTGCAATTGATAAACGACGCAGGCGTTTAGGAGGAAAGATCAATCTTCCAGAGCAGCAgagtcaacaaacaaaaaaagtttgtcCTGAACAATTAGTTGAAGTACAATTTAAAAAGGAACCTTGCGAAGATCTATCTATCACAGAAAATGACAGCCATTTAgagaaagaaattgaattaagCGATAATTCATTGGATCCTGAAAGTGTGAAAAGtgtcaataaacaaataaaagaaacatcaaACGCTAATGAATCGACAAATTCAACAGTATCAGATGGCGAAAGGTCATTCAAATGTGATCAATGTGAAAAATCTTATCGATGGAAACGCAACTTGATCGTACATAAACGCAGCCAtttagacaaaaataaatgggTCAGTTGTCTTCATTGCAAAAGGAAATTTATGCACAAAGAAAGTTATATTTCTCACTTGAAAAAATATCACGAAGAAGAATGGAAAGCGTTGAAAATTTCGGCAACTCTTTCAGAACATAGACAATGTAAATCAGTTAACATAAATCTTTGTCAACCGAATGGTTGCAAACTAGTACAATGCAtgatttgtttacaaaaatatactaaaatcAATGAACTGCGAAATCATTTGAATGAGCATCCAGACATTTCTTCATTTGCAGAACGACCCAATGAGACAATACAGGAAATTGCCgaaagttttttaattgacTGTAAAGAAGATATAACTGAAGAAATGTTGATTATGCGAATACACAAAGATTTAAGTGCTAAAAAGTTTGATAAATTTTACTCAATTACAAATCAATCAGGTTATGAGTTAAGTTTATCGAGCTCAGAGAGTGACAGTGATTTCGATATGGAATCGGAAGAGCACTCAAGTAAGatttcaaaaagaaactaCACTTGTGAATTATGCAACGAAACATTTACCCGGAAATACCAAGTTTTTTCTCACCAACGGGAACAACATGAGTGGAAAGATGCAGTTCATGTTTGCAGACGGTGCGATGCACGCTTTGTTAACAAACTACTACTGGAACATCATTACAAATCTCAGTGCAGAAATTCACAGAAGCGTTTCAAATGCCGAAAGTGCCCTCTAACATATCGATGGAAACACAATTTAGTAACACATTACCGAGAACATAAGAAGAATAAAGAAACATTGAAATGTTCGGAGTGCAACCGTACCTATGATGATAAAAAATCTTTAACTATACATATGCTTAAAATTCATGCTGACGATTCCAAGATGTTGTTTTGCCATTGGTGTAGTCGAACATTTTACCGGAGAGATTATATGTTAAAACACCTTAAACGTCATGGCATAAGAGAAAAAGATTTGCCTCTTGCTGAAATGCTTGTTATGGCAACTTCGAAACCCAATGGTGACAAAATCATCCAAtgcaaaatttgttatttacaatTCGAAAGAATCAATGAGTTAAAAGTACACATTCTGTTGgaactgaaattaaatttatcgaGACATCAGAGCTACGATTCACTGGCCAATTATTCAATTACAAATGAATCTGGCTTCGAACTACATCTCGATGACTCAGAAACAGATGAAGAAGATTCCGTTGGGAGTAAGAAGATATCTTACAAATGTGAAATTTGCCAGCTTCAGTGTAAGCGCAAGTTTGAAATGTTTAAACATCAAAGATCAATGCATCGATTTGAGCATTTGCCGCACTCTTGCGAAAAgtgtatttttaaatgtgtttCAAAGgaaATACTTGATCATCATCGGAGCACTCAATGTTTTAATGAGCAGAAGCAGTTGTCTTGCGAAAAatgttcttttaaattcatGTGGCCTGAAAACTTGACGCGGCATATGTTGCTCCAGCATCCTGTTGAAACGGAAAACAAGAATACTCCACTAGAATCTAACATAAGTAATGTGACAGACACGTCAGTTCCCAATATAGATGGAGCAACAGCTGCGATTACTCAATTGCAGTGTCCACATTGTGATCGAACCTATGTTCAACAATCTCGGCTTAATAATCATATAAGAGATGTTCATATAAAAGgtgacaaaaagaaaaaagaagctGAACGAAGATTCCTCTGCTCCTTATGTGGCAAAGAATCCCAGTCGGCCAGGGatttagatatacatatgCGAAGACACACAGGAGAAAAACCATTTAAATGTGATATGTGTGACATGGCATTTCCACGAAACTGTGAGATGATGCAACATCGAAGAAAACACACAGGTGAAAAACCTTATCATTGCACTGTTTGTGGCAAGGATTTTGCCCGCTCTGACAAACTTAAACGCCATATGCTGACTCATAGTGGCTTGAAGCCATACAAAtgcacattctgtgaaaagtGCTATCGTCAATCTAAAGATCTGAAAATACATCTCCTTCAGCATACTGGCTAG
- Protein Sequence
- MQSKRICRTCNVSGSIETFNLNTRPKKYQGKILLDMLIEVTNIDVKMEYTDNFPQCICRICDRKLKNAYDFVIQARDANLEMLNYFNQNKEIQSKTECLQEIPIEVCTEQSNELNLKEEPCEIESGNEENNEESLDPLVMNEIVKNSELNQRSEKIKETTSSSSAIDKRRRRLGGKINLPEQQSQQTKKVCPEQLVEVQFKKEPCEDLSITENDSHLEKEIELSDNSLDPESVKSVNKQIKETSNANESTNSTVSDGERSFKCDQCEKSYRWKRNLIVHKRSHLDKNKWVSCLHCKRKFMHKESYISHLKKYHEEEWKALKISATLSEHRQCKSVNINLCQPNGCKLVQCMICLQKYTKINELRNHLNEHPDISSFAERPNETIQEIAESFLIDCKEDITEEMLIMRIHKDLSAKKFDKFYSITNQSGYELSLSSSESDSDFDMESEEHSSKISKRNYTCELCNETFTRKYQVFSHQREQHEWKDAVHVCRRCDARFVNKLLLEHHYKSQCRNSQKRFKCRKCPLTYRWKHNLVTHYREHKKNKETLKCSECNRTYDDKKSLTIHMLKIHADDSKMLFCHWCSRTFYRRDYMLKHLKRHGIREKDLPLAEMLVMATSKPNGDKIIQCKICYLQFERINELKVHILLELKLNLSRHQSYDSLANYSITNESGFELHLDDSETDEEDSVGSKKISYKCEICQLQCKRKFEMFKHQRSMHRFEHLPHSCEKCIFKCVSKEILDHHRSTQCFNEQKQLSCEKCSFKFMWPENLTRHMLLQHPVETENKNTPLESNISNVTDTSVPNIDGATAAITQLQCPHCDRTYVQQSRLNNHIRDVHIKGDKKKKEAERRFLCSLCGKESQSARDLDIHMRRHTGEKPFKCDMCDMAFPRNCEMMQHRRKHTGEKPYHCTVCGKDFARSDKLKRHMLTHSGLKPYKCTFCEKCYRQSKDLKIHLLQHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00062168;
- 90% Identity
- -
- 80% Identity
- -