Acom008140.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- egg_2
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010000678.1:101194-103954[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-10 5.5e-07 30.0 0.0 7 72 424 486 420 490 0.81 2 2 0.79 3.3e+03 -1.4 0.0 40 58 688 706 687 717 0.81
Sequence Information
- Coding Sequence
- ATGATTACGTGCTGGTCGTTTATGATgttaaaatatgCCAGTATTGCTGATAGAAAGCAGCCGGGAAACGAAAGTGGTAGCTCCGATGAGGATGCCACCAATGAAGAAAATCAATGTGctatggatgatCCAGATTTTTCCAATAAAGATTTGGAAATGCTGGACGTGAACTTggaaaaatctattaaaagaGTATTCAACAATACTGTTATAAGAAATCAATTAACTTGTGAAAAAGAAATGCTCGCCAATGCCATGAATGGACAGTTTACCATTATTGAAATATCGGAACAAGAAGTAGAAGAAGTTCAAATAATGGCGCCTAATAGCCAAGCGACTTATGATGATATTATAGAATTTGATGCCAAAGTCATGCCAACATTGAAATCGTATAATGCCGGGTCCCATAATGATCATCATATATTTTTACATGGCAATTATTATGCGTATAAAAGCCAAGCAATTATGCATTGGCTTCCATGTAGAGTAATCCAGATAGTGGGCGGCATCAATGGagttatacaaaaatataaaatcaaattccaTATGCCGCACTATGTACAGGCCAAGACCGTGTCAGCTAAGCAGATGGCTTATTTTGATCCGCCGCTGGAAACATTGACCGTCGgCACCCGGGTTGTTGCTCTTTTTGACACTTCGATAGAGCATTGTATGAggaaaaaagtatttacaCAACATGGTTTTTATCCTGGTATTATTGCGGAGCCTTCAACATCAGCCAACAAATATAGatatttgatattttatgatGATGGATATGCTCAATATGTGAGTCATAGAGATGTACGCGTTGTGTGTCAGGCATCCGATAAAGTTTGGGAAGATTTTTGTCCAGGTTCACGTAATTtcatacagaaatatttagAAGACTATTCCGTAAATAGGCCTTTGATGAATTTCCAAACGGAACAAGTAATTTATACTATATTTAATGGCAACTGGCGGCATATACGCGTTGTCAAAATTGATTGCAGTATAATGTTAGTCCAATATGTATCCTGGAGGCCGAAGCGCATGGAATGGATGTATCGAGGTTCACCTCGTTTgCGAGAGCATTTGTTAAGGGAAGATTATCAACTACAACTCGGGTCGCCAATAATGAAAGTgaatcaacaaaatacaaaagttgAAATATATAAGACACCACATCCATTGCAAAATCATTCACAAAACTCAAATCCTGTAAGTGATTTAAAGAACTCATCCATGAAAAACCATGAATGCAACCGCGACTGCGCTAATACAGTAGTATGCCCTCGATTGGAAGATGGTAGTCCCTTGGATATACCGTTGCGTTCCGGATGGGAACGTGTGACACAGCCCATTTTGTATAAGGCACCGTGTGGTAAATGGCTTCACAACATGGCAGAGGTACGACGATACCTGCAAATTACGGAGAATATCTTGAATCCAGATAACTTTGATTTTACTCCGCAGGGTTCCTCTCTGAATCTTAATGAAAAGATTCTTTCTGGATGCGATTGTGAAGTTGATTGTGGcgATAATTCCAAATGCTCTTGCTGGCAACAGACTTTTAATGAATTAGCTAACAGCAAACCCAAGAAGCATCTCGGCCTAATTGGCTATCAAAACAAGCGGCTTTATGAACATGTCGCCTCTGGGATCTATGAATGCAATTCTAAATGCAAGTGTGATTCGAATTGCTCAAACCGCGTCGTTCAGCACTCAGCATCTCAGATACGTTTACAACTTTTCAAGACTTTAAATAATGAATGGGGCCTATTTTGTAATGATGCTGTACCAAAAGGCgcatttatttgtatgtacaaAGGCAATGAGGATGATAGTAATTTGGATTACATTAAAGTGGCTGGACTGTATGAATGTGATGTTCAGAACTCGGaaaccaaagaaaatgaaCATTCTTATTCGACATACAGGCCCAATCCTgaagatgatggtgatggatTCCGATCCTCTTGCTCTAATTTAAAGGAACATCCATCAAGTTTTAATAGATTTTCTCAAATGAACGAAGAAGTTTCTCAAGGAAGACAAGTTCcgatacaaacatattttggCAAAGATGAAAAAACTACAAACGATTTGGCTCTCTACATCCACCACTCTGTCAAGCCAAATTTGTTTGCACAATCAGTTTACGCTGATCAAAGGATGGTGGGTTATTTTGCAAATCGTTTTATACCATCGGGTACACAActgaaatgcaacaaaaatgatgTAGTTGGAGCAGTGCCCGGTGGTGAGCGTTTGTAA
- Protein Sequence
- MITCWSFMMLKYASIADRKQPGNESGSSDEDATNEENQCAMDDPDFSNKDLEMLDVNLEKSIKRVFNNTVIRNQLTCEKEMLANAMNGQFTIIEISEQEVEEVQIMAPNSQATYDDIIEFDAKVMPTLKSYNAGSHNDHHIFLHGNYYAYKSQAIMHWLPCRVIQIVGGINGVIQKYKIKFHMPHYVQAKTVSAKQMAYFDPPLETLTVGTRVVALFDTSIEHCMRKKVFTQHGFYPGIIAEPSTSANKYRYLIFYDDGYAQYVSHRDVRVVCQASDKVWEDFCPGSRNFIQKYLEDYSVNRPLMNFQTEQVIYTIFNGNWRHIRVVKIDCSIMLVQYVSWRPKRMEWMYRGSPRLREHLLREDYQLQLGSPIMKVNQQNTKVEIYKTPHPLQNHSQNSNPVSDLKNSSMKNHECNRDCANTVVCPRLEDGSPLDIPLRSGWERVTQPILYKAPCGKWLHNMAEVRRYLQITENILNPDNFDFTPQGSSLNLNEKILSGCDCEVDCGDNSKCSCWQQTFNELANSKPKKHLGLIGYQNKRLYEHVASGIYECNSKCKCDSNCSNRVVQHSASQIRLQLFKTLNNEWGLFCNDAVPKGAFICMYKGNEDDSNLDYIKVAGLYECDVQNSETKENEHSYSTYRPNPEDDGDGFRSSCSNLKEHPSSFNRFSQMNEEVSQGRQVPIQTYFGKDEKTTNDLALYIHHSVKPNLFAQSVYADQRMVGYFANRFIPSGTQLKCNKNDVVGAVPGGERL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061127;
- 90% Identity
- iTF_00061127;
- 80% Identity
- -