Acom009250.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010000836.1:79442-91993[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.2 6.7e+03 -3.1 0.2 167 191 23 47 13 59 0.42 2 4 0.35 1.2e+04 -3.9 1.7 32 53 155 175 135 207 0.44 3 4 4.3e-114 1.4e-109 366.9 26.1 1 299 321 620 321 621 0.89 4 4 0.088 2.9e+03 -1.9 4.1 216 245 646 674 624 694 0.50
Sequence Information
- Coding Sequence
- atgcccCCAAAACGTGGAAAGGGtaaaacagcagcaacaacgcCGGCAGCTGCTgctaaagagaaaaaacaacaaaagtcgTCAAAAAGTGTGATAGCCAAAGAAGAAGTAGCGGTGGTGGTGGAAgataataagaatataaacAAAGTTGTGAAAACAAAAGGTGCAAATGTATCTTCTATAATTccaacaccaccaacactaccaccaccaccaccgccggCGCCACCACTAGAAACAGTCTCGGTTCCACTACCACCAAAATCAGCATCGCCAACAATATCCAGATCAAACAGCGATGAAGTCATCGAAGAATTTGATTTCAGTGATAGCGACCTACGTGCcttagatgatgatgatgatgatgttgattatAATGAAGTTGCCTCAAGAAAAGTTGGtgacaaaattgaaaatacagaaaaagaaaacgcaTTCGCAAAGAACATTGATGAAAGTGCAAATAACAAAGACCACGATAACGACAATAACAATTCAACAATTGATAACAATGATAAAGAGTCAATAAAAGAtaaagcaacaacaccaacaaaagataatgaaaataataataaagttgaCGACTCAAGTAttgttaatgttgatgatgatacaaaaggcaaaaaaaatatgccacCAGCCAATTTGATTCTGTCGCCTACtgatgacgataatgatgatgatcagcTTAAGCAACTACTATCACCATTTTGTCCAATTACACCCAGTCGTATAGTGGATACCGGCGATGATGTTGAAGATCGTCTTGATCATAATAAACAACTGGATAACATAAATAAGaatgacaataatgatgatggcggTTCTTCAACTGTTTTAACACGTAACAAAAGTGATAATCATAATGACGAAGAAGGTGCTGTTggttatgattttaattatcaaGGCGATTCTAAAGATGAAGTAGTAGTGCAATTTCTTGGTGTATCAAATGTGATTgCCGAAGCCAGATTGGCGGCACGCAGACAAGCACGCGCTGAAGCTCGGGAAATACGCATGCGTGAATTGGAGCGTCAACAAAAGGAACAAGAACAGAATGCAGATCGTGTATTTGATATGCATACATCTGCTGGTACTAGTAATGATCCTTTAACTCGTACAACACGTCTAGGATCTGGTGTACcagctgctgttgttggtctGTTGAATGCAACCCGCGTTGTTAATGCCAGTTCAATGTCGTCACGAAGGAGTAGTGAAGATTCACTTGAAGAAGAGGGCAGAAGTCTAAGGGATATAAGACATGAATTAAAGgATGTTGAAGAGCGATTTCGCAAAGCGATGATTGCAAATGCCCAATTGGATAATGACCGCGCCTCACAAAcatttgaagtgaaactgctcaaagacaaaattgaaacaatgCAAGAATCTTATTCGCAATTAGAACGTGAATTCAAAGAGAAATCACGTGATTATAATGCGCTCAAACGTAATCTAGATAGATTAACATTAGAGCTGAAACTGGTGCAGGGTCAGCTTAGTGAACGTGACACACTCATTGCAGAACAGGGTCTAGTGATTGTTGCCATCGAGAATAGCGATGGCACAGATGCAAAGCGTGCTCTAGTCAGCGTAGAAAACGCGAATGTTTTGGCCTCAGTGCAGGGTTCATTAgATGTACgactcaaaaaatttaatgaggaaaaacaacaactcGTTGGCGAGGTACAAAAATTGCAAGAGCAACTGGATGCCTACAAAAGCGAGGGCAAAGGTCGCggcaatttattaaatggtCCATTAGGGTCTGATGAAGATTATGAGGCTCAAAgagaagcaaacaaaatcatatcagactataaatataaattgcaaAAGGCTGAACAGGAAATCGCTAGTCTGCAGGCGAGTTTAGCACGTTCAGAAACGCAAGTCATACGCTATAAAAGTACGGCGGAAGCAGCAGAGAAAGCTGAAGCTGAACTTAAAGTAGAACGAAGGAAACTTCAACGTGAGaATCGAGAAGCAATGGAACGTCTGGAGGAGCTGGAAACATCaaataatcatttattaaaacgTTTGGATAAATTGAAGAATGCAAAAAGTGCATTGCTTAAAGATCTTTGA
- Protein Sequence
- MPPKRGKGKTAATTPAAAAKEKKQQKSSKSVIAKEEVAVVVEDNKNINKVVKTKGANVSSIIPTPPTLPPPPPPAPPLETVSVPLPPKSASPTISRSNSDEVIEEFDFSDSDLRALDDDDDDVDYNEVASRKVGDKIENTEKENAFAKNIDESANNKDHDNDNNNSTIDNNDKESIKDKATTPTKDNENNNKVDDSSIVNVDDDTKGKKNMPPANLILSPTDDDNDDDQLKQLLSPFCPITPSRIVDTGDDVEDRLDHNKQLDNINKNDNNDDGGSSTVLTRNKSDNHNDEEGAVGYDFNYQGDSKDEVVVQFLGVSNVIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTSAGTSNDPLTRTTRLGSGVPAAVVGLLNATRVVNASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTFEVKLLKDKIETMQESYSQLEREFKEKSRDYNALKRNLDRLTLELKLVQGQLSERDTLIAEQGLVIVAIENSDGTDAKRALVSVENANVLASVQGSLDVRLKKFNEEKQQLVGEVQKLQEQLDAYKSEGKGRGNLLNGPLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -