Acom005929.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- Rfx2
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010000443.1:3995560-3998982[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8 3e+04 -3.5 0.4 27 40 39 52 35 56 0.75 2 3 0.23 3.7e+03 -0.6 0.3 14 46 95 126 85 129 0.74 3 3 9.6e-38 1.6e-33 116.0 0.1 3 78 336 411 334 412 0.97
Sequence Information
- Coding Sequence
- ATGCATTCGCGATTCACCTTGGAAGCTCAACCGCGACATCcactccatcatcatcatcatttacagCCAGCAAGTTATGCGGTGAATCTGTTGGACAAGTGTCGTTGCAAGATTCATCAATACCAAAACAATTGTCAGCATCTTACCAtcgagcaacaacaacaacagcatcaccagcaacatcaacaacaattacctCTATTATCGCCATCTTCGCCATCAACACCAATATCgacatcgccatcatcatcgttgattcatcatcatcagcaacatcaattgcaacatcaacaacaaacaataccACGTCATttgcatcatcattatcatcatcatcaccatcatcatcagactTTTGTAGCTACCGCTGCCAATTATACAACTTGTTCCTCCTCCGCCTCTGCCGTCGGTAGTGGTGCATCTACGTCAGTGGCTTGTGGTGGcactactgctactgctgctgctgctgcggccGCTGCTGCATTTGCTTCCAGTTCCACGGCAGCAACCACAACCTCAGCCATGTATCGACGACACAATAATTTATCCTATTGCGGTGTTTCCGCTCAGGATGCTGGTCAAAACTATCAAGTGCAATATGTTGATACAGAATTATATCACAGCAATTCCAGTCAAACCCAAATgACCTATCCATTTTGTCCCGTCGGTGATTATCAGACAAATGGTCAAACTTACTATTCAACCACAACGACAGGTAACTATGCGGCGGCAACAAATACCCCAACAACGCATGCATCGACCTTACCGTATCTGGTGCCCGTAGATGAGAGTCTACTATTGAATGGTTCCTCACAATCACATAGTCGAGATTCAGCGCATAGCATGACGCAAGAAGTCGCCTACATTCATGAGGGCACACCACAGACACCAACATctaccacaacaacaaattctgtGAGTGGAGGCAGTAATGGTACTGGGGGCGGTGGTGCATCACCCGACAGTGAACAAAGCCCATTGGGAGGCACGAATAAAATTGCCTCGGCAACGATCAAATGGCTATCACGCAACTATGAGACCGCAGACGGTGTCAGCCTGCCACGTTCAACGCTCTACAATCATTACATTCAGCACTGTAACGAGCACAAGTTGGAGCCAGTGAACGCGGCCAGTTTTGGCAAATTGATAAGGTCAGTTTTCTCAGGACTACGCACACGGCGACTGGGCACACGCGGCAATTCgaaatatcattattatggCATACGCATAAGTCCAGGATCAATGCTAAATCACGCCATGGATGAGAAACCGCTAAATGGTTATCAGACATCAAATGCTGGTGCTGGTGGCAGTAGCATTGTAGGCAATGAGGCAGCAGGCATTAGCAATGGTGGTGCTGTTGGTTTGCCACAGCATACACATATAAGTTCAAGCGCTGTGGGCAATGGCATTGGTGGTGGAGCCAGTGGCGGTGGTGTCAGTGGTAATACAACGCGTACAGCCAAAAAGCATACATTGAAACCGGAGACATACGAGACTTGTATACAGtATATTGGCAATGGTGCTGGCGCTTTGCCTAATATATTTCCACCCATCGAACTgaataattcatttaacaatGAATTAACAACGGACGATGTTGAGACATTCCGTGCCATGTATCTTGAGCATTGTAAATCCTTTCTGGAAGCCATACTTAATTTGGAATTCAGTACAATTGAGTATCTACTACGCGATTTCTGGCGAACACCGAAAAATacgagcagcagcagcaacaacaacaacaacaacaataataacaacaatctGGATGATTGTGAGGAAAAACAACATTTGAATAGAACGAAGCTGTATTTGCTTTGCCATTGCGCAGAAGTGCAAAAGTTTGTCAAGGAGGTTGACTATCAATTCTATCAAAATATGGTGGATGTAATAATTCCGGATGTTTTACGCTCAATACCAAATGCTCTCACACAGGCCATACGTAATTTTGCCAAGAATCTAGAGATTTGGCTATGCGAAAGCACAGTGGGCGTTCCTGAGCGTATGATACAAATTAAGACAGCATCAGTATCAGCATTTTGTCAAACCTTGCGACGTTATACATCCCTAAATCATTTGGCTCAAGCGGCACGCGCTGTCCTACAGAATAATGCTCAAATATCACAAATGCTAAGCGATTTAAATCGTGTTGATTTTCATAATGTTCAGGAGCAAGCAGCCTGGGTTAGTCAATGTGAACAATCGATTGTTCAACGTTTGGAAAGTGATTTTAAAACAGCtttgcaacaacaaagttCTTTGGAACAATGGGCTTCATGGCTACAATTGGTTGTTGAGTCTGCTCTGGAAGAATATCATGGCAAACCGACTTATGCCAAAGCTGCTCGACAATTCCTACTCAAATGGAGTTTTTATAGTTCCATGATAATACGAGACTTGACATTGCGTTCTGCCTCCAGTTTTGGAAGTTTTCATCTTATACGTTTACTATTCGAtgaatatatgttttatttggtTGAACATAAGATTGCTGAGGCACATCAAAAGACTGCTATAGCAGTTATATGTGAGCGATTGCAAAAAGATATTGATTTTGAGTTTGAATGTCAATTTGAGTATATAACCGGTGATGCAGAGACAGCAAGTGGTAATGAAGTAAAACGTTTGAAACGCGAATGA
- Protein Sequence
- MHSRFTLEAQPRHPLHHHHHLQPASYAVNLLDKCRCKIHQYQNNCQHLTIEQQQQQHHQQHQQQLPLLSPSSPSTPISTSPSSSLIHHHQQHQLQHQQQTIPRHLHHHYHHHHHHHQTFVATAANYTTCSSSASAVGSGASTSVACGGTTATAAAAAAAAAFASSSTAATTTSAMYRRHNNLSYCGVSAQDAGQNYQVQYVDTELYHSNSSQTQMTYPFCPVGDYQTNGQTYYSTTTTGNYAAATNTPTTHASTLPYLVPVDESLLLNGSSQSHSRDSAHSMTQEVAYIHEGTPQTPTSTTTTNSVSGGSNGTGGGGASPDSEQSPLGGTNKIASATIKWLSRNYETADGVSLPRSTLYNHYIQHCNEHKLEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRISPGSMLNHAMDEKPLNGYQTSNAGAGGSSIVGNEAAGISNGGAVGLPQHTHISSSAVGNGIGGGASGGGVSGNTTRTAKKHTLKPETYETCIQYIGNGAGALPNIFPPIELNNSFNNELTTDDVETFRAMYLEHCKSFLEAILNLEFSTIEYLLRDFWRTPKNTSSSSNNNNNNNNNNNLDDCEEKQHLNRTKLYLLCHCAEVQKFVKEVDYQFYQNMVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESTVGVPERMIQIKTASVSAFCQTLRRYTSLNHLAQAARAVLQNNAQISQMLSDLNRVDFHNVQEQAAWVSQCEQSIVQRLESDFKTALQQQSSLEQWASWLQLVVESALEEYHGKPTYAKAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAHQKTAIAVICERLQKDIDFEFECQFEYITGDAETASGNEVKRLKRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00062482;
- 90% Identity
- iTF_00062482;
- 80% Identity
- -