Aequ000388.1
Basic Information
- Insect
- Ametastegia equiseti
- Gene Symbol
- foxn4
- Assembly
- GCA_963989295.1
- Location
- OZ022389.1:3167384-3171551[+]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9 1.4e+04 -3.0 0.6 31 52 237 258 211 268 0.53 2 2 5.8e-37 9.1e-34 116.2 0.0 2 86 282 367 281 369 0.93
Sequence Information
- Coding Sequence
- ATGTTGGATACGGAGAGCAGACACAGTACCGGGTTGGATCAGGGACCCACCAGGGATCCTTGGCTCACAATGGACTATTACTTGGGTACGGACAGCGTCTCCTTACAGGAGATGCTGGACGTTGACATAAAATGTGAAGTCGAAGGGGTCATAGGCGGCCATCCAGAGCTGGGATTCAATTTTACTGATTTATCCCCTCTGGAGATGGACGACAATCCAGTAGGCTGCCAAGACGACCTAAACGGCTGGTTCAGCTCCGCCAGTCTGCTAAATGGCAATAGCAATAGTTCCAACAGTAATTTCAATTTGGACCTTAGCGGAGGAGACGCAGCGTCTGTGATGGTCAATCCTAACTCAGTAATGCCTCATATAACTGTACGAAGTCCGAGTCCGCACAGCAATCGTCgtcacttttctttttctgtgaaaaaggaggtgaaagaagagaaagtTGACGTTGAAGACGAGAACGATTCCGAAGGGGATCACTACGAGCATGATATGACGGAAACTGAAGatgaggaagaggaggaagaggagtCGGAAGATGAACAACAGGAACTTACGACGACGATTATTCCAGCAAAACTTAAGCCGACATTGGTCCCAACTAATGCAACTATGAAAACGATATCGGCGCAGATAACTAAACCGCAAATACAACAGAAATTGAACACTGTTACTAGCATTAAAGTACAAAATATAAAACTCATGCAGAACAATTCTCATCATACGCAACACGTCAGGAAACAAACTTACAACAATAACGTCCATAACACCGTCACCACCATCAAAAGGGACAAGGAATTTGAACTCTCAGATTATGACGAAAGACCCTATCCTAAACCTGCCTATTCTTACTCGTGTCTCATCGCTATGGCGCTAAAAAACAGCCAGACCGGATCTCTACCTGTTTCTGAAATCTACAATTTTATGTGtgAACATTTTCCCTATTTCAAAACGGCTCCGAACGGTTGGAAGAATTCCGTAAGGCACAATTTGTCTCTGAACAAGTGTTTTGAAAAGATAGAGAAACCTGCCGGTAATGGAAATCAAAGAAAAGGATGTTTGTGGGCGATAAATCCAGCCAAAGTAGCCAAGATGGATGAGGAGGTGCAAAAATGGTCGAGAAAAGATCCTCTCGCAATCAAAAAAGCTATGATCTATCCAGATCACTTGGAGCTACTCGAAAGAGGAGAAATGAAGTACGCCGGAAGTGGGGATATGTCGGAAGAAGCAGAAAGCTCCGGGGATGAAACCGCGGAGGAAAATACAACTTACGACGAACCTGTTCACAGCCACATTGCTGCAAACTCCGTAACGGACAGTTACGACGAAAGTAGTCAAGACTTTGACATAGACATCACGGAGCACATTTACGATGAAATTGACATAGAGGATAACAAGGAAGCGTTACACATGCAATTGAACATTGCCAAACAACCGACTTTTGAGTACGAACTTAGTCCTAGCACAAAAAGGCAAAAAACGTTGACCGGCACGTTGCAAGGAAATTACGTCTATCAGCCAGTAGCGACGTCGCGTAGGAAAACTCCTCTACTTTTGAGGCCAGGAGCAACGCCGAATTCCTTTCTTAAAAtcgattaa
- Protein Sequence
- MLDTESRHSTGLDQGPTRDPWLTMDYYLGTDSVSLQEMLDVDIKCEVEGVIGGHPELGFNFTDLSPLEMDDNPVGCQDDLNGWFSSASLLNGNSNSSNSNFNLDLSGGDAASVMVNPNSVMPHITVRSPSPHSNRRHFSFSVKKEVKEEKVDVEDENDSEGDHYEHDMTETEDEEEEEEESEDEQQELTTTIIPAKLKPTLVPTNATMKTISAQITKPQIQQKLNTVTSIKVQNIKLMQNNSHHTQHVRKQTYNNNVHNTVTTIKRDKEFELSDYDERPYPKPAYSYSCLIAMALKNSQTGSLPVSEIYNFMCEHFPYFKTAPNGWKNSVRHNLSLNKCFEKIEKPAGNGNQRKGCLWAINPAKVAKMDEEVQKWSRKDPLAIKKAMIYPDHLELLERGEMKYAGSGDMSEEAESSGDETAEENTTYDEPVHSHIAANSVTDSYDESSQDFDIDITEHIYDEIDIEDNKEALHMQLNIAKQPTFEYELSPSTKRQKTLTGTLQGNYVYQPVATSRRKTPLLLRPGATPNSFLKID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01303121;
- 90% Identity
- iTF_00939338; iTF_01303121; iTF_00938482; iTF_01413970; iTF_01412918; iTF_01411292; iTF_01412120; iTF_00718347; iTF_00719204; iTF_01199954; iTF_00175577; iTF_00174840; iTF_00173981;
- 80% Identity
- -