Aarm001007.1
Basic Information
- Insect
- Amblyteles armatorius
- Gene Symbol
- -
- Assembly
- GCA_933228735.2
- Location
- CAKOFT020000032.1:341979-345345[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.02 1.4 9.5 2.8 1 23 409 432 409 432 0.95 2 14 1.5 1.1e+02 3.6 0.2 3 21 441 459 439 460 0.92 3 14 5.6e-06 0.00038 20.7 1.8 1 23 518 541 518 541 0.94 4 14 0.0016 0.11 13.0 0.1 1 23 554 577 554 577 0.97 5 14 2.8e-05 0.0019 18.5 3.1 1 23 598 621 598 621 0.93 6 14 0.17 11 6.6 1.0 1 20 627 646 627 651 0.91 7 14 0.057 4 8.1 4.3 1 23 664 686 664 686 0.93 8 14 1.3 87 3.9 0.1 3 23 694 715 692 715 0.87 9 14 1.1e-05 0.00073 19.9 1.6 1 23 729 751 729 751 0.99 10 14 4.1e-07 2.8e-05 24.3 1.6 1 23 757 779 757 779 0.98 11 14 0.0019 0.13 12.7 0.9 1 23 785 807 785 807 0.98 12 14 0.0041 0.28 11.7 4.1 1 23 813 835 813 835 0.99 13 14 4.8e-06 0.00033 20.9 0.7 1 23 841 863 841 863 0.99 14 14 4.3e-05 0.003 17.9 2.0 3 23 871 892 869 892 0.95
Sequence Information
- Coding Sequence
- ATGCTGACGCTCATTCTGCAAACTTCGGAAGGACAGCAGATCGAGTTGAACGTCCAGCCGGAGGATACGTTCGCCGATTTGAAGATACAATACTCCGACACCGACGGCTTGTCCGAGTCGCTGGAACGACTCATCACCAATGGAGCCACGGTGGAAGAAAACACGAGGATATTCGACTATGTGACTAGCAgcgcACACGAATGGTTCAGCGCGGGTGAAACGCCCGAGTCGGATGCGCAGACCTCGGAGCCTGCGGATCCTCGGACGAGGGTGAAAGAATGTTGCGCTCAAGGCTGCTCCAATTCCGAAGCCGTCACGCCTGGTAAACCATTTTTTCCTTTGCCTACAGATCACGAAAGGCTTTCCGCGTGCCTGACGGACGCGGGCAGGCTGGATCCGTACAGCCAGGTTCTCGGCTTAGACGCGGATAGTTaccagaaatattttttatgcggCAATCACATCGCCGAAGTTTCTTTACCGACGGCGCGCGCTGCCGAGCCGACGTCCACGATTTCGCTGCTGAAGCCGAAAAATGCGAGGGTTCAACCCGACGTGAGCAACGAACTGAAAAACGAGCTTCTAGAAGTCGATTCCGAAACGAGAGAGTCCGTTCTCGATCTACCGAGAACACCGGACAATTTCGAGCATCCCGGAATTCTTTGCCGTTTGTGCGGCGAAACTACCGCGAATCCTGTTTATTTGTACGCGGAGAAAGGAGAGAACTCCGACTCTGAGTACAGTCTCGCTGACAAGATCAACTTGTGCCTTCCCGTTACGgTGAGCGTGACGGATCCACTGCCGAAGCAGATATGCCGAGACTGCCAAGTAAAGCTGAACGCTTGCCACGAACTTGCGGTATCCTCCCTGAGAACGGAGGACAAGCTTACTCTTCTCTTGCGAGAGAACAAGCTCTGCGCGAGCGGTGCTTCCGATCACCAGTGTCCTCTGTGTCTCGAGGGGGCGATGCGGATGGTAAAAAGAAGCGGCATCTACCGTAAGGAGGATCTACAGAAGGAcctaattttttcgaacgacCGGAGACACGCGAGAGGCTCAGCCGGGACCGAGGAGAATTCAAAGAATTTCGACAACGTCATCCCGGACAGCGGTTCGCTTCCGGTGCCGGAAGGAGAATTCCCGTGCTCCATGTGCAACGAGAGGCTGATCGGCGTCACGGCAATCCGCTCGCACCGATGTCCAACCGATACGAAACATTCTTCTCACAACTGCGTCatctgcgataaaaaaaatttcgctcaTCCCCGAGAGCTCGAGCTTCACTATCGTCGGCACGGCATGAAGGAGGAGAAATTGTTCTGCGAGCAGTGCAGCTACTCGTGCGGGGAGCTCGACGCGCTGACCGAGCACGTCAAAGCCTGCAGACCCGAGTTCTGGCAATTCCACTGCGACAAGACGCTCGCGAACGGCGAATCGCCGAACGATCACGATTGTCCCGGCGCTTCGTCGGATGCTCGCGAGGCCGAGGTGAAATTTTCACCGGAGCCGGAGGCGCCGAAGACATCGTCGAAGAAGAGGCAACCGACGCGCTACAGTTGTCACTTCTGCGAGAAGCGATTCGCCCGGAAGGGAAGCCTGCAGAAGCACATATCGGCGGCGCACAACGACTCGATGGACGATCCAGCGGCCTCGAAGTGCTACAAGTGCAGAGTCTGCAACGAGGCCTTCGTGCGGGAGGCGGACGTCGCGACGCACGTGAACGTTCGTCACCTCGACGACTCGCGCTCCGGACTCGAGCGCGCCGTCGACGAATTGACGGTCGCGAGTTTGTACACCTGCGAGTACTGCGAGCGGTGCTTCACCACGCCGAGCTCCCTCCACGATCACCGCGAGGCCGAGcacgaaaaaatttcatgttACTCCTGCCCGACGTGCCTCGAGATGTTCGACTCTCACAAGCGGCTCGCCGCCCACAAGAGTCTGCGTTCTCATCGCAAGCCTCTCGACTACCTCAACCTGAAGCAGCTCTACCTGTGCAGGTACTGCGACAAGACCTTCCTCCATCATTCTACTCTATCGGCGCACGAGCTTCAGCATCGCGAGCTCGCGCCCTATCTCTGCAGACCGTGCGGTCTCAGCTTCGAGACTTACAGGGAGGTCGCCTCCCATCGGGACGTCGTTCATCCCTACCAGTCGGAGCTTCACGAGAGCTCCAGCCGATCTTACAAGTGCCAGTACTGCGGCAAGCTCTTCTCTCACGAGGTCGTTCTCGTCAAGCACATCAGAATGCACACCGGCGAGCGACCTCACAAGTGTTCCGTGTGCGGCAAGGGATTCTCGCAGAGCTCCGGCCTCTACACTCACATGAAGATCCACTCGGATCTCCGGCCCTACAATTGTCCGAGCTGTCCGCGCACCTTCAAGATCAAGGGCGATCGCAACAATCACGTGAAGAAACACTCGGGCAATCGGCCGTACAAGTGCGAATTTTGCTCGAAGGCGTTCATGACCCAGCACGTTTACAGTCAGCATCGGAGAATTCACACGAACGAGCGGCCGTACAAGTGCGAGATTTGCGGCGAGGCCTTTCGAAGGTCTTACGTGAGGACGGTCCACATGAGAAGGCACACGGGCGAAAAGCCGCATCTCTGCGATCTGTGCCCGAAGACCTATCGACAGCGCAGCGATCTCGTCAAGCATCGGAAAGTACAGCACGGCATAAGCGTCGCGGCGAACAACGAGATCGTTTTTCCCGACGAACGCGAGGACGATCCTTACGACTCATTCGCGAAAGCTAACAAGATCGTCGAAACTGCGACCGGCAATTCGCTGCTGTTGAGCCTCTGA
- Protein Sequence
- MLTLILQTSEGQQIELNVQPEDTFADLKIQYSDTDGLSESLERLITNGATVEENTRIFDYVTSSAHEWFSAGETPESDAQTSEPADPRTRVKECCAQGCSNSEAVTPGKPFFPLPTDHERLSACLTDAGRLDPYSQVLGLDADSYQKYFLCGNHIAEVSLPTARAAEPTSTISLLKPKNARVQPDVSNELKNELLEVDSETRESVLDLPRTPDNFEHPGILCRLCGETTANPVYLYAEKGENSDSEYSLADKINLCLPVTVSVTDPLPKQICRDCQVKLNACHELAVSSLRTEDKLTLLLRENKLCASGASDHQCPLCLEGAMRMVKRSGIYRKEDLQKDLIFSNDRRHARGSAGTEENSKNFDNVIPDSGSLPVPEGEFPCSMCNERLIGVTAIRSHRCPTDTKHSSHNCVICDKKNFAHPRELELHYRRHGMKEEKLFCEQCSYSCGELDALTEHVKACRPEFWQFHCDKTLANGESPNDHDCPGASSDAREAEVKFSPEPEAPKTSSKKRQPTRYSCHFCEKRFARKGSLQKHISAAHNDSMDDPAASKCYKCRVCNEAFVREADVATHVNVRHLDDSRSGLERAVDELTVASLYTCEYCERCFTTPSSLHDHREAEHEKISCYSCPTCLEMFDSHKRLAAHKSLRSHRKPLDYLNLKQLYLCRYCDKTFLHHSTLSAHELQHRELAPYLCRPCGLSFETYREVASHRDVVHPYQSELHESSSRSYKCQYCGKLFSHEVVLVKHIRMHTGERPHKCSVCGKGFSQSSGLYTHMKIHSDLRPYNCPSCPRTFKIKGDRNNHVKKHSGNRPYKCEFCSKAFMTQHVYSQHRRIHTNERPYKCEICGEAFRRSYVRTVHMRRHTGEKPHLCDLCPKTYRQRSDLVKHRKVQHGISVAANNEIVFPDEREDDPYDSFAKANKIVETATGNSLLLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721477;
- 90% Identity
- iTF_00721477;
- 80% Identity
- -