Basic Information

Insect: Amblyjoppa fuscipennis
Gene Symbol: -
Assembly: GCA_963575735.1
Location: OY754489.1:34595578-34598087[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0017 0.15 12.9 0.3 2 23 126 147 125 147 0.94

2 11 0.003 0.28 12.1 4.2 2 23 211 233 210 233 0.88

3 11 0.007 0.64 11.0 1.8 1 23 383 405 383 405 0.96

4 11 0.00013 0.012 16.4 1.6 1 23 411 433 411 433 0.94

5 11 6e-06 0.00054 20.6 0.7 1 23 439 461 439 461 0.97

6 11 1.6e-05 0.0014 19.3 1.2 1 23 477 499 477 499 0.98

7 11 2.1e-08 1.9e-06 28.3 3.6 1 23 505 527 505 527 0.99

8 11 2.5e-06 0.00023 21.8 0.4 1 23 534 556 534 556 0.99

9 11 6.6e-06 0.0006 20.5 1.7 1 23 562 584 562 584 0.97

10 11 0.00024 0.022 15.6 4.2 1 23 590 612 590 612 0.98

11 11 7.5e-06 0.00068 20.3 1.8 1 23 618 640 618 640 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0017	0.15	12.9	0.3	2	23	126	147	125	147	0.94
2	11	0.003	0.28	12.1	4.2	2	23	211	233	210	233	0.88
3	11	0.007	0.64	11.0	1.8	1	23	383	405	383	405	0.96
4	11	0.00013	0.012	16.4	1.6	1	23	411	433	411	433	0.94
5	11	6e-06	0.00054	20.6	0.7	1	23	439	461	439	461	0.97
6	11	1.6e-05	0.0014	19.3	1.2	1	23	477	499	477	499	0.98
7	11	2.1e-08	1.9e-06	28.3	3.6	1	23	505	527	505	527	0.99
8	11	2.5e-06	0.00023	21.8	0.4	1	23	534	556	534	556	0.99
9	11	6.6e-06	0.0006	20.5	1.7	1	23	562	584	562	584	0.97
10	11	0.00024	0.022	15.6	4.2	1	23	590	612	590	612	0.98
11	11	7.5e-06	0.00068	20.3	1.8	1	23	618	640	618	640	0.99

Sequence Information

Coding Sequence: ATGTTCATCGTGACGAAGGAAATAGACAGCGAAAATATAAGCAAACTATGCCGGACCTGCTTGCGGGAGGACGGCGACAAGATGGTATGTCTGTTCGTCGGTCCAGCTGGTTCTTCTCTCGCTGCGAAGCTGCGAACGCTTTCGTGTCTCGAGGTGTGGCAGGGAGACGGTCTGCCAGAAAAGTTATGCGATCGCTGTGTCACCAGAGCAGAGTCCGCACTTTTGTACAGAGAGCAATGCCGGGCAGCCGATCTGGCACTGAGAGAAGCAGCATCCCAGGTTTCCAGAGCAGCTCTCGACGCAGCGGTTCCCAGCTCCAAGCTCTACCACCAGCAGAAAGTCTTCACGCCGGTTCAGACTTCTCACAAGTCTCAAAAATGCTCGGAGTGCGGTGCAATTTTTGCCACCTACCAGGAGCTCTGCGCTCACGGCCAGGCCCACTTGCCGTTCGTCAGAGAGGCGAGGCCAGTTCAGCACATGAACATCGTGGAGTCTCAGGGTGTCTCGGGATACATGAGTTCCGATTCCCGACTGGAGAAGTCTTCCGGACTCTTGCCGGGCGCGTTCGCGCCGCAAGGAATCATAGAGACTGTCTCGCCGGCGAAAAACGGTCGAGCCGCCTGCGCTCTTCACTGCTCGATCTGCAATCACACTTTCACCAACAGAGTACAATTGATAAACCATCACGGCTTGAACCACTGCCGCGAGGACGTCGAGACCTCCTGCGACGACGACAATCTCGCGATCGTCGCCGATCCCAAGATCAACGGCATTCGCACCGGAAGTTTCGAGCGGAATATCGGCCAATCGGTTCACAACGGAATACAAAATTTGTCTTACAGCCGCAGCAACGAGGTGCCCATCGAGGCGATCAATTACTCCGCTCACATGGCCATCGACTCAAGAAACATAAGCGTCAACGACGACTCGTCGCACGTGCGGCGGCAAGACATCGACTCCGGGGAGAGCGAAGTTTCGAGCGACACTTGCTCCGATCAAATGCTGCGCTTTCCGAGCTTCGCCGACGTCGATATACGACACGAAGCGCCGAATGAGCGGCAAACCCAGCCTCTGTGTCTTCCGAGggacgagattttcaaagattcgtTGAACATCTCGGATTGCCAACGTACACCGAGGAAATTGCACAAATGCGCTCTCtgcgaaaaatcatttttgcaaAGATCGAAATTAATAGCGCACAATCTCCGGCACACCGGTCAGCGGCCTTACGCATGCATTCACTGCGACAAAGCTTACACTTCGAGGAGCAAGCTGAACGCTCACACGAGACTCCACACCCAGGTGAACGTTCATCGTTGCGAGATATGCGACAAAACCTTTCCGTATCCCTCGTATCTCGCGGAGCACTCGAAGATTCACGAGGCGTCGAGGGCCACGAGTGGTCTCAATCGGAGACCGAAGGAGTTCGAGTGCTCGATGTGCAGCAAACAGTTCAGTCTCCTGAAGAATCTGAAAGCCCACTTGAGGCTCCACACCGGCAAGGGTCTGTTCCGATGCGAGATATGCCATAAGGCCTTCAGTCAGAAGTACAATTTGAAAGTTCATCTGCGAACTCACAATGCCGCCGGTAAATTTTTCAAGTGCAACTACTGCGGAAAATCGTTCGGTGCGCGAGGCAATTTCGTCGAGCACCTTCGCATTCACACCAAGGTCAAGCCATTCGAGTGCGCCATGTGCGCGAAGACCTTTTCGCAATCGAGTCACCTCAAGACTCACGAAGCCACCCACAACTCACTGAGGCCCCACCAGTGCAGATTGTGCGGCAAACGCTACAAACTCGCGGCTCATCTGAGGAGACACGAGAGTACACACAATGCCGGCGAGTCTTACAAGTGCGAACTCTGCGATCAACTGTTTTCTCAAGCTTTCAGCCTCAAGAGACACCTCAAGAGGCACAGCGACGCTCAAATCTGA
Protein Sequence: MFIVTKEIDSENISKLCRTCLREDGDKMVCLFVGPAGSSLAAKLRTLSCLEVWQGDGLPEKLCDRCVTRAESALLYREQCRAADLALREAASQVSRAALDAAVPSSKLYHQQKVFTPVQTSHKSQKCSECGAIFATYQELCAHGQAHLPFVREARPVQHMNIVESQGVSGYMSSDSRLEKSSGLLPGAFAPQGIIETVSPAKNGRAACALHCSICNHTFTNRVQLINHHGLNHCREDVETSCDDDNLAIVADPKINGIRTGSFERNIGQSVHNGIQNLSYSRSNEVPIEAINYSAHMAIDSRNISVNDDSSHVRRQDIDSGESEVSSDTCSDQMLRFPSFADVDIRHEAPNERQTQPLCLPRDEIFKDSLNISDCQRTPRKLHKCALCEKSFLQRSKLIAHNLRHTGQRPYACIHCDKAYTSRSKLNAHTRLHTQVNVHRCEICDKTFPYPSYLAEHSKIHEASRATSGLNRRPKEFECSMCSKQFSLLKNLKAHLRLHTGKGLFRCEICHKAFSQKYNLKVHLRTHNAAGKFFKCNYCGKSFGARGNFVEHLRIHTKVKPFECAMCAKTFSQSSHLKTHEATHNSLRPHQCRLCGKRYKLAAHLRRHESTHNAGESYKCELCDQLFSQAFSLKRHLKRHSDAQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00059624;
90% Identity: iTF_00058894;
80% Identity: -