Afus014711.1
Basic Information
- Insect
- Amblyjoppa fuscipennis
- Gene Symbol
- -
- Assembly
- GCA_963575735.1
- Location
- OY754493.1:11884786-11885790[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-08 7.4e-05 23.0 0.0 27 100 13 85 6 97 0.87 2 2 2.1 2.3e+03 -1.1 0.0 34 59 151 176 146 201 0.82
Sequence Information
- Coding Sequence
- ATGGCGAGATCATCGGAAGTGGACATGGGAAGAGCCCTCAAAATGTCAGCGGTCGGTCGAACCCAACGCGATATCGCAAACACGATCGGGACGATCGGTTCGGTAATTAACCGATTACTTGCCCGATACAACCAAACCGGCAGTTCGCGGTATCGACACGATGGTGGCAGGCAACACGTGACGACACCTCGGGAAGATAGACAAATCGTCCAGCAAGCGCGGCAAACACCCGGAGTCAGTGCAAACGAGATTAACGCTCCGATTCCTCACAGAGTGTCGCAACGCACGATCGGACGAAGACTGGCGGAGCAAGCTCTGCGATCTCGGCGTCCGGTGATCAAATCGACACTCAGCGTTCGGCATCGGGCTGCTCGAAGAGATTTTGCTGAGAACCACGAAAATTGGACTCCGGAGCAGTGGTGGCAATGTCTCTTCACTGATGAAGCCAAAATTCAGCTCTGCGACAATTCGCGAAACGCGCGAGTGTGGCGCCGAACGGGAGAGCGGATTAACGAACGCTTCCAAAGCCATTCGCGAGCTTTCGGTGGAGGTTCCATCACCGTATGGGGCGGAATCTCACTTGAATCTCGGACGAAATTGGTAGTGTTCCGTAACCAGACTGTTAGGGGGCACGTGTACATCGATCTTGCTCCTGTCGTCGCTCCGGAAGCTCGACGAGTCGGAGACGGCTTCGTCTTCATTGACGACAACGCTCCGGCTCATCGAGCCCGGATTGTCAACAGATTCCTCGATGAGCAAGGAATCAACCGAAGTGACTGGCCTGCTAACAGTTCGGATTTGAATCCGATAGAAAACGTTTGGGCGTTATTGAAGCGGCGAATTCGATCGAGAAGACCGGCACCGAGAACACTCGATGAACTTGAGGTCGCAGCCCGAGAGGAATGGCTTGCCATTCCTCAAGAACAAATCACCGCAACGATCGCAAGCATGAATCGTCGCTGTCTAGCTGTCACTCGTGCTCGAGGGGGCGCTCTCAAATATTGA
- Protein Sequence
- MARSSEVDMGRALKMSAVGRTQRDIANTIGTIGSVINRLLARYNQTGSSRYRHDGGRQHVTTPREDRQIVQQARQTPGVSANEINAPIPHRVSQRTIGRRLAEQALRSRRPVIKSTLSVRHRAARRDFAENHENWTPEQWWQCLFTDEAKIQLCDNSRNARVWRRTGERINERFQSHSRAFGGGSITVWGGISLESRTKLVVFRNQTVRGHVYIDLAPVVAPEARRVGDGFVFIDDNAPAHRARIVNRFLDEQGINRSDWPANSSDLNPIENVWALLKRRIRSRRPAPRTLDELEVAAREEWLAIPQEQITATIASMNRRCLAVTRARGGALKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058658; iTF_00057893; iTF_00058657; iTF_00057894; iTF_00057895; iTF_00057896; iTF_00057897; iTF_00057899; iTF_00057900; iTF_00057901; iTF_01364599; iTF_00058655; iTF_00058656;
- 90% Identity
- iTF_00057894;
- 80% Identity
- -