Avir002599.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001340:92466-98285[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.5 2.8e+02 1.7 0.0 26 46 196 216 191 222 0.84 2 9 0.23 18 5.5 0.1 22 44 220 242 213 246 0.87 3 9 0.028 2.2 8.4 0.0 20 52 246 278 242 279 0.83 4 9 4 3.1e+02 1.6 0.0 21 45 275 299 272 302 0.84 5 9 0.69 54 4.0 0.1 21 45 329 353 321 357 0.86 6 9 1.4 1.1e+02 3.1 0.2 26 45 362 381 353 384 0.87 7 9 0.069 5.5 7.2 0.5 21 52 385 416 381 418 0.87 8 9 0.35 27 4.9 0.4 21 48 441 468 437 472 0.86 9 9 0.11 8.8 6.5 0.1 21 48 469 496 465 500 0.86
Sequence Information
- Coding Sequence
- ATGGATGGTTTAAAAGAAGCGCCAGATTCATTAATGAATAATAAAATGGAAAGTGATCCTAAACAATTGTTATCTAATATTAAAACCGAAGAAATTGAAGAATGTAATCTCGAAATGGAGAACTTGCATCAAATTGACTTTTATATGATCAAAAGGGAAAGTTGTGTAGAAAACGTTTCTCCAACTAAAGGTGATGTGTTAATAAACAAAGAAAATATAAAAACTGAAAATGATAATTCAAATGAGGGTATTCAAAAAAGAAAATATGATATCAAAATTAAGACAGAAATTGTACAAAGTACATTCCCTGTGTCTACAAATGCTATCCATGATGTTAAAAATCGACAAACAGTTCAAACAAACAAATTGTATTCAAGGAAAAAATGTTTTCCACCAGCGCCAAAAAAGTATCAACCTCACTTTGGGAAATTTTATGGAACATGCTCCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTACATTTACCACTTTTTAGTTAAGTCTATAAAATCTGTTAACTTGAGAAGGAATAATTCTGCTACAAAACGTGTTGGACAAATATCGTTCAAATGCGAAATTTGTTCAAAATGTTTCACACAATCCAGTGATTTAATAAAGCATAGCAGAATTCACACTGATGACAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGATTCCAATACATTAAAAAGGCATATCAGAAGTCACAATAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAAGGTTTTATAAAATCCAGTAAATTAAAAAGGCATATAATAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATATTTCAAATCCGAAAGTTATTTAAAAGAGCATATTAGAATTCATACTGGCGAAATTAAGTGTGAAATTTGTTTAAAATGTTTCCAAAACCGAACTTATTTAAAAGAGCATATTAAAAGTCATACTGGCGAAAAACCTTTTAAGTGTGAAATTTGTTTAAAATGTTTCAAAAATCAAATTTATTTTAAAAGACATATTAGAATTCATACTGGTGAAAATTTATTCAAATGTGAAATGTGTTCAAAATGTTTCTCACAATCCATTGGTTTAAAAAGGCATGTTAGAATTCACACTAACGAGAGACCTTTTAAATGTGAAATTTGTTCAGAATGTTTTACATTATCCAGTACTTTAAAAAGGCATATTCGAATTCACACTGGTGAAAAACCTTTCAAGTGTAAATTTTGTTCAAAATGTTTTACAGATTTAAGTACTTTAACAACTCATGTTCAAGCTCACACTAACGAGAGACCTTATTTATGTGAAATTTGTTCAAAATGTTTTTCACGACCAAATAATTTAAAAGAACATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATATGTTCAGAATGTTTTATATCATCCCGTTATTTAAAAAAGCATAGTACTAAAATTCACACTGGTAAAACTTTACAATCGTGA
- Protein Sequence
- MDGLKEAPDSLMNNKMESDPKQLLSNIKTEEIEECNLEMENLHQIDFYMIKRESCVENVSPTKGDVLINKENIKTENDNSNEGIQKRKYDIKIKTEIVQSTFPVSTNAIHDVKNRQTVQTNKLYSRKKCFPPAPKKYQPHFGKFYGTCSSCGQFFCDKLLFLNHFYIYHFLVKSIKSVNLRRNNSATKRVGQISFKCEICSKCFTQSSDLIKHSRIHTDDKPFKCEICSKCFIDSNTLKRHIRSHNNEKPFKCEICSKGFIKSSKLKRHIIIHNNEKPFKCKICSKYFKSESYLKEHIRIHTGEIKCEICLKCFQNRTYLKEHIKSHTGEKPFKCEICLKCFKNQIYFKRHIRIHTGENLFKCEMCSKCFSQSIGLKRHVRIHTNERPFKCEICSECFTLSSTLKRHIRIHTGEKPFKCKFCSKCFTDLSTLTTHVQAHTNERPYLCEICSKCFSRPNNLKEHIRIHTGEKPFKCEICSECFISSRYLKKHSTKIHTGKTLQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056933;
- 90% Identity
- iTF_00056933;
- 80% Identity
- iTF_00056933;