Avir011914.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000051:203038-205138[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.58 46 4.2 0.0 21 48 206 233 201 237 0.84 2 7 0.057 4.5 7.5 0.2 21 52 234 265 230 265 0.87 3 7 0.012 0.99 9.6 1.2 21 46 262 287 258 293 0.87 4 7 0.2 16 5.7 0.1 21 44 290 313 285 318 0.89 5 7 0.1 8.2 6.6 0.1 21 44 318 341 314 348 0.89 6 7 1.3 1e+02 3.1 0.2 21 49 346 374 342 379 0.84 7 7 0.021 1.7 8.9 0.1 21 51 402 432 395 434 0.84
Sequence Information
- Coding Sequence
- ATGTTTAAGAAAGAATCGAAATTTGAATACGAAAATTTTCAACAATTCATAGCAATGGATAATTCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAATTAATCAAGAGATCAGTATTGAACTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATAGAATTTCCAGATTTTGATGAAGAATTAAATTCAGAGCGAAGCATCAAAAGATATTCGAAGAAACAGGAAAAAAATTATAAAAAACGTTTTCTATCAGCGGCAACAAAATGGCAACCTCACTTTGGAAATTTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAGCCATTATTATATTTACCACTTTTTCGCTAATTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTTTGGCATAAAACATATTAACCGACAAAATCTTGGTAATGTAAACAAACAGAGTGATTTAAAAAAATATATTAAAACCCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAACGTTTCACAACATCCAGTTATTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATATTTTATAAATTCCAGCAGCTTAAAAAGTCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAACATTCTAATAGTTTAAAAGCTCATATTAGAATTCACACTGCTGAAAAACCTTTTAGATGTAAAATTTGTTCAAAATGTTTCACACAATCCTGTAATTTACAAAGTCATATTAGAACTCATAATGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCAGAGATTACAGTAACTTAAACAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAGATGTTTCAAACATTTCAGTACCTTAAAAAATCATATTAGAATTCACACTGACGAGAAACCATTTAACTGTAAGTTTTGTTCAAAATGTTTCACAGATTCCAGTAGTTTAATAGTTCATAAGAGAACTCACACTAATGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATAAATTCCAGTAACTTAAAAACTCATATTAAAACTCACACTGCTGAAAAACCTTTTAAATGTTAA
- Protein Sequence
- MFKKESKFEYENFQQFIAMDNSSINSVTIKSENDISSQINQEISIELDIKKEELHSVCDLPDFKIEFPDFDEELNSERSIKRYSKKQEKNYKKRFLSAATKWQPHFGNFYGTCSSCGKFFYDKLLFLSHYYIYHFFANSKKSVNLRRNNFGIKHINRQNLGNVNKQSDLKKYIKTHTGEKPFKCKLCSKRFTTSSYLKTHIRTHTDEKPFKCEICSKYFINSSSLKSHIRIHTDEKPFKCEICSKCFKHSNSLKAHIRIHTAEKPFRCKICSKCFTQSCNLQSHIRTHNDEKPFKCKICSKCFKHSSTLKTHIRTHTDEKPFKCKICSKCFRDYSNLNSHIRTHTDEKPFKCEICSRCFKHFSTLKNHIRIHTDEKPFNCKFCSKCFTDSSSLIVHKRTHTNEKPFKCKICSKCFINSSNLKTHIKTHTAEKPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056946;
- 90% Identity
- iTF_00056946;
- 80% Identity
- iTF_00056946;