Avir017388.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000959:22833-36173[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2 1.6e+02 2.5 0.0 24 46 162 184 148 189 0.75 2 7 0.4 32 4.7 0.0 21 47 215 241 204 246 0.83 3 7 1.1 84 3.4 0.0 21 46 243 268 240 275 0.88 4 7 1.1 91 3.3 0.3 23 52 273 302 267 302 0.84 5 7 0.2 16 5.7 0.0 21 48 299 326 297 330 0.86 6 7 0.56 44 4.3 0.1 21 44 327 350 323 355 0.89 7 7 0.0072 0.57 10.3 0.0 21 46 355 380 352 386 0.90
Sequence Information
- Coding Sequence
- ATGGATGTTTTTGAGGGAAAAATTAAAGCAGAGGAAGAGTTTTATGAACAATTTTCAATCGAAAATCAGAATTGTTATCGAACTGATATGGATCTTGGTTTTAATATTAAGGAAGAAGTTTTAGATCCGATTGAAGTTAAAAATAACTCTGATAATGATTTAGTTTTAAAAAGAAGATCGTTTAATTCTGAATGTTTTCAATCTGGACGAAAAAAATCAAAATCTCAATCTGGAATCTATTATCAAACCTGTTGCTATTGTGGAAAAAATTTCATTCACACCCTACTTCTAACAGACCATATTTATGTTTACCACTTTTTACAAAATACTTCAAAAAGTGTTAAAATTGCAAAAAAACGCAACAAAAAACACAAAATTTGTTCAAAAATATTTCAACAAAAAAAAGATGTACGTAAAAGGAGCCAAATAAGTTTCCAAATCCAAGAAAAAGGGAGAACAAATAATGAAAAATCAAATACAAAATCGTTTATGTGTAAAATTTGTACAAAATTTTTCGCTAGAAAAGATAGTTTAACAAGACATTTAAAAATTCATAGTGGTGTAAAATTGTTTAAATGTGATTTTTGTTCGAAACAGTTTACTTATTCGGGAAATTTAAAAAAACATCAACGCATCCACACCGGAGAAAAACCGTTTAAATGTGAAATTTGTTCAAAATCATTCACACACTCATTCAGTTTAAAAATCCATCTAAAAACACACAGCGGGGAAAAACCGTTTGAATGTAAAATTTGTTCGAAAAAATTCACACTTTTATCTAATTTAACAAAACATTTAAGAATCCATAATGGTGAAAGACGATTTAAATGTGAGATTTGTTTAAAATTGTTTACTAGAAAAGACAGTTTAAACCGTCATATTCGACTCCACACCGGGGAAAAACCGTTCGAATGTAAAATTTGTTCGAAATCGTTCACACTCGCGTGCAATCTAAAAAAACACATTCGAATTCACACCGGGGAAAAACCGTTCAAATGTAAAATTTGTTCGAAATGTTTCACACAATCGACGAGTGTTCACGCGCATATGATTACTCATACCGGGGAAAAACCGTTTAAATGTCAAATTTGTTATAATCAATTCACGCATACGTCTTCTTTGAAAAAACATCTTAAAATTCACGCTAAGAAAAATAATGTTTCGCTTATTTTTTTTAAAGAATCTCTTAAATCTACCGATAATAAGTTCTCGATATTACCGTTTTCTCTTTCAATGTTGTAG
- Protein Sequence
- MDVFEGKIKAEEEFYEQFSIENQNCYRTDMDLGFNIKEEVLDPIEVKNNSDNDLVLKRRSFNSECFQSGRKKSKSQSGIYYQTCCYCGKNFIHTLLLTDHIYVYHFLQNTSKSVKIAKKRNKKHKICSKIFQQKKDVRKRSQISFQIQEKGRTNNEKSNTKSFMCKICTKFFARKDSLTRHLKIHSGVKLFKCDFCSKQFTYSGNLKKHQRIHTGEKPFKCEICSKSFTHSFSLKIHLKTHSGEKPFECKICSKKFTLLSNLTKHLRIHNGERRFKCEICLKLFTRKDSLNRHIRLHTGEKPFECKICSKSFTLACNLKKHIRIHTGEKPFKCKICSKCFTQSTSVHAHMITHTGEKPFKCQICYNQFTHTSSLKKHLKIHAKKNNVSLIFFKESLKSTDNKFSILPFSLSML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057019;
- 90% Identity
- iTF_00057019;
- 80% Identity
- iTF_00057019;