Avir001934.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001247:228292-231371[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.018 1.5 9.0 0.1 20 44 260 284 250 288 0.91 2 6 0.018 1.5 9.0 0.2 20 44 288 312 284 316 0.89 3 6 0.16 13 6.0 0.7 22 49 318 345 313 348 0.81 4 6 0.14 11 6.2 0.3 21 46 345 370 341 376 0.86 5 6 1 80 3.5 0.0 21 45 373 397 369 403 0.89 6 6 0.8 63 3.8 0.1 25 45 405 425 398 430 0.86
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAAGATGCATCAAATCCATTAATGAATAATAAAGTTGAAAGTAATTCTAAAGATTTGTTATCCAATATTAAATCCGAAGAAATTGATATTGAAGAATGTAAACTCGAATTCGATAATTTGTATGAATTCGATCTTTCTACGATCAAAACGGAAAGTTGTGTCGAAAAAGAAGTTTCCTCAACTAAAACTGATGTTGTGTTAATAAGCAGAGAAACTATAAAAACCGAAAATGTTGATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATATGGAAATTAAGACAGACATTACAAACCGTCCATTTGATTTCCCTATTAGTAGAAATGATATCCATAATTTTGATGAAAATCGACAGACAGTGCAAACAATTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACTATGGAAGCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTGTAAAAAATCTGTTAATTTGAGAACGAGTAATTATGCTACAAAACATATTAACCTAAAAGATTTTGGTAATTTAAAAGAACAGATGAGGACTTACAGTGGACAAAACGGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAAAATTCACACTGGTAAAACACCTTTCAGATGTAAAATTTGTTCAAAATGTTTCACACGAAATGGTGGCTTAAAAGATCATATTAAAACTCACACTAGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATCTTCCAGTAATTTAAAAGTTCATATTAGATCTCACATTAGTGAAAAACCTTACAAATGTAAAATTTGTTCAAAATGTTTTCTACACTCTGATAGTTTAAAAAGGCATATAAGAACTCACACTGGTGAAAAAACTTTCAGATGTGAAATTTGTTCGAAATGTTTCAGATATTCTAGTAATTTAAATAGCCATATTAGAACTCACACTTGTGAAAAACCGTTTAGATGTCAAATTTGTTCAAAATGTTTCACAGAATCCAGTAGTTTAAAAAAACATATGAGAACTCACACTGGTGAAAAACCTTTCAGATGTAAAATTTGTTCGAAATGTTTCACAGAGTCCGATCATTTAAAATGGCATATTAAAACTCATACTGGTGAAAAACTTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCACTACTTTAAAAAATCATATTAAAACTCACACTATGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAACTTAA
- Protein Sequence
- MDVFKDASNPLMNNKVESNSKDLLSNIKSEEIDIEECKLEFDNLYEFDLSTIKTESCVEKEVSSTKTDVVLISRETIKTENVDSNEGIQERKSDMEIKTDITNRPFDFPISRNDIHNFDENRQTVQTIKMYSWKKRFLSAAKKWHPQFGKYYGSCSFCGQFFCDKLLFLNHFYIYHILVNCKKSVNLRTSNYATKHINLKDFGNLKEQMRTYSGQNGFKRQKDLKQHIKIHTGKTPFRCKICSKCFTRNGGLKDHIKTHTSEKPFKCKICSKCFTSSSNLKVHIRSHISEKPYKCKICSKCFLHSDSLKRHIRTHTGEKTFRCEICSKCFRYSSNLNSHIRTHTCEKPFRCQICSKCFTESSSLKKHMRTHTGEKPFRCKICSKCFTESDHLKWHIKTHTGEKLFKCKICSKCFTQSTTLKNHIKTHTMKNLLNVKFVQNVSHNPVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057021;
- 90% Identity
- iTF_00057021;
- 80% Identity
- iTF_00057021;