Avir002524.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001328:69102-71727[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.22 18 5.6 0.0 21 47 111 137 103 142 0.84 2 3 0.011 0.87 9.8 0.1 21 46 139 164 131 170 0.84 3 3 0.00093 0.074 13.2 0.0 21 44 167 190 163 193 0.91
Sequence Information
- Coding Sequence
- ATGAATATTTGTGCAATAAAAGAAGAAAAAATTGAAATTATTGACGAATCAAAACCAGAATTCGACAATTTTGATCAGATGGAAAAAATTGAAGAACATGAGGTGAATCTTAAATTTGAAATTAAAAAAGAAGAATTAGAATCTACAATAGATTTACCGGATTTTAAAATCGAGTTTCAAGATTCTGATGAAGAATTAAATTCAGAGCGAGATTCAACAAAACAGGAACCGAATTATGAAAATATTGGCGATAAATGTTTAAAATGTAAAATTTGTTCGAAATGTTTCACACAGTTGAGTCATATAAAATCTCATATTAGAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAGTTTAAAAAAGCATATTAGAACTCACACTAATGAAAAACCTTTTAAATGTAATATTTGTTCGAAATATTTCACACAATCCTGTCATTTAAAAAATCATATTAAAACTCACACTGGGGAAAAACCATTTAAATGTGAAATTTGTTCGAAATATTTTAAACAATCCCGTAGTTTAAAAATGCATATAAAAAATCACTAA
- Protein Sequence
- MNICAIKEEKIEIIDESKPEFDNFDQMEKIEEHEVNLKFEIKKEELESTIDLPDFKIEFQDSDEELNSERDSTKQEPNYENIGDKCLKCKICSKCFTQLSHIKSHIRTHTGEKPFKCKLCSKCFTESGSLKKHIRTHTNEKPFKCNICSKYFTQSCHLKNHIKTHTGEKPFKCEICSKYFKQSRSLKMHIKNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057120;
- 90% Identity
- iTF_00057197;
- 80% Identity
- iTF_00057197;