Avir017166.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000932:201032-212596[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.9 6.3e+02 0.6 0.1 22 44 64 86 59 92 0.79 2 12 0.17 14 5.9 0.2 22 47 93 118 88 123 0.82 3 12 0.84 67 3.7 0.5 22 50 121 149 115 152 0.82 4 12 3.5 2.7e+02 1.7 0.1 21 47 148 174 144 181 0.84 5 12 9.4 7.4e+02 0.4 0.1 17 44 171 199 163 203 0.71 6 12 0.18 14 5.9 0.1 21 48 204 231 199 235 0.87 7 12 0.022 1.8 8.8 0.2 21 52 232 263 228 263 0.89 8 12 0.036 2.9 8.1 0.1 21 49 260 288 256 291 0.86 9 12 0.15 12 6.1 0.0 22 44 289 311 286 315 0.90 10 12 0.018 1.5 9.0 0.1 21 45 316 340 312 347 0.90 11 12 1.1 89 3.3 0.2 22 45 345 368 341 375 0.84 12 12 0.86 68 3.7 0.5 20 48 371 399 364 400 0.81
Sequence Information
- Coding Sequence
- ATGGAACATGTTTTTTCTTGTGGACAATTTTTCTGTGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTAATTAATTGTAAAAAATCTGTTAACTTGAGGAGGGATGATTCTGCTACAAAACAAATTAACCCAAAAGATCTTAGTAAAGCAAACGGACAGATGATAACTGACAGTAAACAAAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCACACGAAAAAATGTCTTAAAAAAGCATATTATTAGAGCTCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTTCACACAACAAATTGATTTAAAACGACATATGAGAACTCACACTCAAGACAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTAGAAACCAATTTTGTTTAAAAAGTCATATTAGAATTCATACTGGTGAAAAACCCTTTAAATGTAAATTTTGTACAAAATGTTTCTCACATTCCAGTAGTTTAAAAACTCATGTTAGAAGTCACACTAACGGGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCCAAGACCAAACTTATTTAATAAATCATATTAAAATTCACACTGATGAGAAACCTTTTAAATGTAAAAGTTGTTCAAAATGTTTCAAAAGATCTAGTTATTTAAAAAGGCATGTTAGAATTCACACTGACGAGAAACCTTATAAATGTGAAATTTGTTCAAAATGTTTTATGTACTCCACTAATTTAAAAACACATATTAGAATTCACAATAACGAGAAACCCTTTGAATGTAAAATTTGTTTAAAATGTTTCACAGACCAAAGTAATTTAAAACAGCATATTAAAATTCACTCTGACGACAAACCTTTTAAATGTGAAATTTGTTTAAAAGGTTTCACAAAATCCAATGCTTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTATAAATGTGAGATTTGTTCAAAATGTTTCACAGAATCCAGAGTTTTAAAAAAGCATATTAAAACTCACACTGGTGAAAAATCTTTCAGATGTGAAATTTGTTCAAAATGTTTTATAGAATCCAATTATTTAAAAAGACATATTAGAAGTCACACTGGTGAAAAACCTTACAGATGTGAGATTTGTTCAAAATGTTTCTCGCGAAAAACTGACTTAACAAAACATATAACAAAAAATCATATTTGA
- Protein Sequence
- MEHVFSCGQFFCDKLLFLNHFYIYHFLINCKKSVNLRRDDSATKQINPKDLSKANGQMITDSKQKPFKCEICSKYFTRKNVLKKHIIRAHTGEKSFKCEICLKCFTQQIDLKRHMRTHTQDKPFKCKICSKCFRNQFCLKSHIRIHTGEKPFKCKFCTKCFSHSSSLKTHVRSHTNGKPFKCKICSKCFQDQTYLINHIKIHTDEKPFKCKSCSKCFKRSSYLKRHVRIHTDEKPYKCEICSKCFMYSTNLKTHIRIHNNEKPFECKICLKCFTDQSNLKQHIKIHSDDKPFKCEICLKGFTKSNALKRHIRTHTGEKPYKCEICSKCFTESRVLKKHIKTHTGEKSFRCEICSKCFIESNYLKRHIRSHTGEKPYRCEICSKCFSRKTDLTKHITKNHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056892;
- 90% Identity
- iTF_00056892;
- 80% Identity
- iTF_00056892;