Avir000589.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001045:363597-367294[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.7 3.7e+02 1.3 1.1 23 43 85 108 71 114 0.56 2 9 0.022 1.7 8.8 0.0 21 45 114 138 106 141 0.90 3 9 0.2 16 5.7 0.0 21 46 142 167 138 173 0.89 4 9 0.6 48 4.2 0.1 21 44 198 221 189 224 0.85 5 9 0.041 3.3 7.9 0.0 21 48 226 253 221 257 0.86 6 9 1.5 1.2e+02 2.9 0.0 21 44 254 277 251 284 0.88 7 9 2.5 1.9e+02 2.2 0.0 22 46 283 307 279 313 0.81 8 9 0.86 68 3.7 0.1 21 46 310 335 305 341 0.82 9 9 0.16 13 6.0 0.5 21 44 338 361 334 365 0.90
Sequence Information
- Coding Sequence
- ATGTCTAAAACTGATATCAAATGTCAAAAACTCAAACCATATGTCATTAACTATGTCAAATGTCAAAAATGTGTTGAAAATGTCATAAATTTGATGCAAATGTCCAAAATTGATGTGAAATGTCAAAAATTCATGTTAAAAGTTAAAAAATCGATTGAAATTTGTAGCAGAATTCAAATTATCACTGATATGAGCTTATCTATTTCAGGTTTCCCAAGTTCAGCAAAAAAAAGGAAAAATCACTGTGGGAAATCTTATCGGACATGTCCTCTATGTGAAATTTGTTCAAAAAGTTTCAGGTTACAACACAAGTTAAAGGAGCATATTAGAATTCACACTGGCGAAAAACCTTTTACATGCAATATTTGTTCAAAATGTTTCACACGATCCGATGATTTAAAAACGCATATTAAAACCCACACTGGCGAAAAACCTTTCAAATGTGAAATTTGTTTAAAATGTTTCACACTATCTAAATCTTTAAAAATGCATATTAGAATTCACACTGGTGAAAAATCATTCAGATGTGAAATTTGTTCAAAATGTTTCACATTGCAAAGTTACTTAGAAAAACATATTAGAATGCACACTGGCGAAAAACCTTTTATATGTGAAATTTGTTCAAAAAGTTTCAGGTTAAGACAAAAGTTAAAGGAGCATGTTAGAACTCACACTGGCGAAAAACCTTTTAATTGCAATATTTGTTCAAAATTTTTCACACACTCGGATTCTTTAAGAATGCATATTAGAATTCACACTGGTGAAAAACCGTTTAAATGTGAAATTTGTTCAAAATGTTTCACACTATCCAGTTCTTTAAAAATGCATATTAGAACTCACACTGGTGAAAAATCATTCAGATGTGATATTTGTTCAAAATATTTTACGGCACAAAGTAACTTAAAAAAGCATATTAGAACTCACACCGGCGAAAAACCTTTCAAATGTAAAACTTGTTCAAAATGTTTCGCAGGATCCAGTTATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAGCCCTTCAGATGTGAAATTTGTTCAAAATGTTTTACGCGATCCCATCACTTAAAAAAGCATATAAGAACTCACGCTGGCTAA
- Protein Sequence
- MSKTDIKCQKLKPYVINYVKCQKCVENVINLMQMSKIDVKCQKFMLKVKKSIEICSRIQIITDMSLSISGFPSSAKKRKNHCGKSYRTCPLCEICSKSFRLQHKLKEHIRIHTGEKPFTCNICSKCFTRSDDLKTHIKTHTGEKPFKCEICLKCFTLSKSLKMHIRIHTGEKSFRCEICSKCFTLQSYLEKHIRMHTGEKPFICEICSKSFRLRQKLKEHVRTHTGEKPFNCNICSKFFTHSDSLRMHIRIHTGEKPFKCEICSKCFTLSSSLKMHIRTHTGEKSFRCDICSKYFTAQSNLKKHIRTHTGEKPFKCKTCSKCFAGSSYLKRHIRTHTGEKPFRCEICSKCFTRSHHLKKHIRTHAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056942;
- 90% Identity
- iTF_00056942;
- 80% Identity
- iTF_00056942;