Avir001040.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001109:152088-161251[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.77 61 3.8 0.0 26 51 189 214 182 216 0.86 2 8 0.0088 0.7 10.0 0.6 22 46 269 293 255 299 0.87 3 8 8.1 6.4e+02 0.6 0.1 22 44 298 320 293 326 0.85 4 8 3.4 2.7e+02 1.8 0.1 20 51 324 355 316 357 0.82 5 8 1.9 1.5e+02 2.6 0.0 21 45 353 377 351 385 0.85 6 8 0.026 2.1 8.5 0.1 18 48 377 408 369 412 0.80 7 8 0.03 2.4 8.4 0.1 21 45 409 433 405 440 0.91 8 8 0.019 1.5 9.0 0.2 11 45 454 489 448 493 0.84
Sequence Information
- Coding Sequence
- ATGGATATTTTTAAAGATGCATCAAACCCAGTAGTGAGTAATAAAATCGGAACGGATTCTCAAGATTTATTATCTAATATTAAAACCGAAGAAATTGATATTTTCGAAGAATCTGAATTCGAGAATCTGCATCAATTCGACCTTTCTAAGATCAAGACGGAAAGTTGTGAAGAAAAAGTTTCTCTAACTAAAAGTAATGCTGTGTTAAATGTTGATTCAAAAGAGGATATGCAAGAAAGAATAAGTGATATCGAAATTAAGACAGAAAATTTACAGCGTGAATTTGATTTACCTGTTTTTACAAATAATTTTGGTGAAAATCGACAAACAGTAGAAACAATCAAAATGTATTCTAGAGAAAAATGTTTTCTACCAGCGCCAAAAAAGTGTCAACCTCACTTTTGGAAATCATATGGAACATGTCCCTCTTGTGGACAATTTTTTTGTAATCAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTCTATAAAATCTGTTAACTCGAGAAGGAATAATTCTGCTAAAAAACATGTTGGACAAATATCGTTCAAATGCGAAATTTGTTCAAAATATTTCACAAAGTCCAGTAATTTAAAAATGCATATTAGAATTCACTCTGACGATAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAAAACCAAAGTTATTTTAAACTGCATATTAGAACTCACACTGGTGAAAAATTATTCAAATGTGAAATTTGTTCAAAATATTTCACACGAAAAAGTAAATTAAAAGAACATATTAGTATTCACACTAACCAGAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTATAGACAAAAAAGTAATTTAAAACAGCATATTGTTAGAGACCACACTGGTGAAAAGTCGTGGAAATGTGAAATTTGTTTAAAAAGTTTTACACAACAAAGTGATTTAAAATGTCATATTAGAACTCATTCTAGTGAAAAATCTTTTGAATGTAAAATTTGTTCGAAACGTTTTCACAATTCCGGTCATTTAAATATGCATGTTAAAATTCACACTGGAGAGAAACCATTTAAATGTGAAATTTGTTCAAAATGTTTTATAGCAGCCACTGATTTAAAAAAGCATATTAGAAGTCACGCTGGTGAAAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCTAGTCATTTAAATGTGCATGTTAGAATTCACACTGGCGAGAAACCTTTTATATGTGAAATTTGTTCAAAATGTTTTATGCAAGCCAGTACTTTAAAAAGGCATATTAAAGCTCACACTGGTGAAAAAGCTTACAAATGTGAGATTTGTTCAAAAAGTTTTACACAAAAAGGGACCTTAAAACAGCATATTAGAACTCACACTGGTGAAAAACCATATAGATGTGATATTTGTTCAAAATGTTTCATAACATCCAATGAATTAAAAAGGCATATTAAAACTAACTCACACTCATGA
- Protein Sequence
- MDIFKDASNPVVSNKIGTDSQDLLSNIKTEEIDIFEESEFENLHQFDLSKIKTESCEEKVSLTKSNAVLNVDSKEDMQERISDIEIKTENLQREFDLPVFTNNFGENRQTVETIKMYSREKCFLPAPKKCQPHFWKSYGTCPSCGQFFCNQLLFLNHFYIYHILVNSIKSVNSRRNNSAKKHVGQISFKCEICSKYFTKSSNLKMHIRIHSDDKPFKCKICSKCFKNQSYFKLHIRTHTGEKLFKCEICSKYFTRKSKLKEHISIHTNQKPFKCEICSKCYRQKSNLKQHIVRDHTGEKSWKCEICLKSFTQQSDLKCHIRTHSSEKSFECKICSKRFHNSGHLNMHVKIHTGEKPFKCEICSKCFIAATDLKKHIRSHAGEKPFKCEICLKCFTQSSHLNVHVRIHTGEKPFICEICSKCFMQASTLKRHIKAHTGEKAYKCEICSKSFTQKGTLKQHIRTHTGEKPYRCDICSKCFITSNELKRHIKTNSHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056904;
- 90% Identity
- iTF_00056904;
- 80% Identity
- iTF_00056904;