Avir009448.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000356:385645-388466[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.05 4 7.6 0.1 18 48 128 158 121 164 0.75 2 4 0.47 37 4.5 0.1 26 44 165 183 160 188 0.89 3 4 0.089 7.1 6.8 0.1 21 44 188 211 184 215 0.90 4 4 0.056 4.5 7.5 0.0 21 44 216 239 212 244 0.91
Sequence Information
- Coding Sequence
- ATGTTGATTCAAATGAAGGTATGCAAGAAAGAAAAAGTTACATCGATGTTAAAACAGGAATTATGCAACGTACCTACATTGGATTTCCCTATTTCTAGAAATGATATCCATAATTTTGGTAAAACAGCGCAAAAAATCAAAATGAATTTTAGGAAAAAATGTTTCCTATCTGCGACAAAAAAGTGGCAACCTCACTTTGGAAGATTATATGGAACATGTTCCTCTTGTGGACGATTTTTCTATGAAAAATTGTTATTTTTAAATCATTTTTATATTTATCACTTTTTAGTTGATTCCAAAAAATCTATTAACTTAAAAAAGAACGATTCTGTTACAAAACACATTAAACTAGAAGATCTTGGTAATTTAAACGAACAGAAGCGAACTCATAGTGGACAAGAATCCTTTAAATGCAAAATTTGTTTTAAATGTTACACCACATCTTATAATTTAAAAATACATTTTCAAACCCACTTTGGTGGAGATTCTGTAAGTTGTAAAATTTGTTTAAAACATTTCACACAACAAAGTAGTTTAAAAAGACATATTAGAACCCACACTGGGGAAAAACCGTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATTTAGCAATTTAAAAATTCATATTATAACTCACACTGACGAAAAGCCTTTTAAATGTAAAATTTGTTTAAAATGTTACAAAGGATCCAGTGATCTTAAAAAACATATTAGAACCCACACTGGAGAAAAAACCTTTTAA
- Protein Sequence
- MLIQMKVCKKEKVTSMLKQELCNVPTLDFPISRNDIHNFGKTAQKIKMNFRKKCFLSATKKWQPHFGRLYGTCSSCGRFFYEKLLFLNHFYIYHFLVDSKKSINLKKNDSVTKHIKLEDLGNLNEQKRTHSGQESFKCKICFKCYTTSYNLKIHFQTHFGGDSVSCKICLKHFTQQSSLKRHIRTHTGEKPFKCKICSKCFTQFSNLKIHIITHTDEKPFKCKICLKCYKGSSDLKKHIRTHTGEKTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057187;
- 90% Identity
- iTF_00057187;
- 80% Identity
- iTF_00057187;