Avir012873.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000579:192685-196488[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.86 68 3.7 0.0 22 45 216 239 213 247 0.85 2 8 4.5 3.6e+02 1.4 0.1 23 44 302 323 298 326 0.86 3 8 0.001 0.082 13.0 0.1 18 48 324 355 319 361 0.80 4 8 0.048 3.8 7.7 0.3 20 45 383 408 376 415 0.86 5 8 0.26 20 5.4 0.2 18 44 408 435 404 439 0.83 6 8 0.14 11 6.2 0.1 18 44 436 463 432 470 0.83 7 8 0.62 49 4.1 0.3 22 46 469 493 463 498 0.84 8 8 0.084 6.7 6.9 0.2 22 44 497 519 492 524 0.87
Sequence Information
- Coding Sequence
- ATGGATGGTAACAAAGAAGCATCAAATCCCTTAACGAATAATGAAATCGAAAGTAATCCTAAAGAATTGGTATCTACGATTAAAACCGAAGAAATTGAAATTGAAGAATGTAAACTCAAATTCGAGAACTTTTATGTTGTAAAAAGGGAAAGTTGTATAGAAAACGTTTCTTCAACTAAAAGCAATGTTGTGTTAATAAGCAAAGAAAATATAAAAATTGAAAATGTTGATTTACATGAGGATATTGAAGAAAGAAGATGTGATATCGAAATTAAAACAGAAGATACATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGAAAATCGACAAACAGGGCACACAATCAAAATGTATTCTAAGAAAAAAAGTTTTCTATCTGCGGCAAAAAAATGTTATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTACACCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAGAATCTGTTGATTTGGGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATGTTTCACAAATTCTAGTAGTTTCAAAATCCATTTTAAACTTCACACAAACAAGAAACCTTTTAAATGTGAAATTTGTGCAAAATCTTTTATAAAATCTATTGATTTAAAAAGGCATACTAGAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATGGAAGCTTAAAACAGCATATTATTAGATATCACACTGATGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATCTAAAACTACATATTAGAATTCACACTGGTGAAAAACGTTTTAAATGTGAAATTTGTTCAAAATGTTTCAAAAACTCTAATCATTTAAAAAATCATGTTAGAAGTCACACTGGTGAAAAACCTTACAAGTGTGAAATTTGTTCAAAATTTTTCACACAATCCAGTAATTTAAATAAGCATATTAGAACTCACACTAACGAGAAACCTTTCAAATGTGAATTTTGTTCAAAATGTTTCACAGATCGCAGTACTTTAACAAATCATATTAAAAGTCACAATAACGAGAGACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAGAACATCTAGTCATTTAAAAAATCATGTTAGAAGTCACACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTTCAAACATCTAGTCATTTAAAAAATCATGTTAGAAGTCACACTGGTGAAACACCTTTCAAATGTGAAATTTGTTTAAAATGTTTCAAAACATCTACACAATTAAAAAATCATGTTAGAAGTCACACTGGTGAGAAACGTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACATCTAGCCATTTAAAACGGCATATTAGAATTCACACTGGTGAGAAATCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCAAGTAACTTAAAAACTCATATTAGAACTCACACTGACGAGAAAGCATTTTAA
- Protein Sequence
- MDGNKEASNPLTNNEIESNPKELVSTIKTEEIEIEECKLKFENFYVVKRESCIENVSSTKSNVVLISKENIKIENVDLHEDIEERRCDIEIKTEDTFDFHANVIHDFVENRQTGHTIKMYSKKKSFLSAAKKCYHHFGKFNGTCLYCGQFFCDKLLFLHHFSIYHFIVKSKESVDLGMNNSATKHIGQISFKCEICSKCFTNSSSFKIHFKLHTNKKPFKCEICAKSFIKSIDLKRHTRTHTGEKPFRCEYCSKCFTENGSLKQHIIRYHTDEKSFKCEICLKCFTLQNDLKLHIRIHTGEKRFKCEICSKCFKNSNHLKNHVRSHTGEKPYKCEICSKFFTQSSNLNKHIRTHTNEKPFKCEFCSKCFTDRSTLTNHIKSHNNERPFKCEICSKCFRTSSHLKNHVRSHTGEKPFKCEICSKCFQTSSHLKNHVRSHTGETPFKCEICLKCFKTSTQLKNHVRSHTGEKRFKCEICSKCFTTSSHLKRHIRIHTGEKSFKCEICSKCFTQSSNLKTHIRTHTDEKAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056872;
- 90% Identity
- iTF_00056872;
- 80% Identity
- iTF_00056872;