Avir000590.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001045:294726-318386[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0079 0.62 10.2 0.1 14 45 379 410 375 413 0.88 2 7 0.47 37 4.5 0.2 21 44 414 437 409 441 0.89 3 7 0.00077 0.061 13.5 0.2 21 45 442 466 438 473 0.91 4 7 2.9 2.3e+02 2.0 0.0 22 46 471 495 467 501 0.82 5 7 0.85 67 3.7 0.7 21 45 498 522 494 529 0.85 6 7 7.5 5.9e+02 0.7 0.2 21 45 526 550 522 553 0.82 7 7 0.15 12 6.1 0.1 21 44 554 577 550 582 0.90
Sequence Information
- Coding Sequence
- ATGCCAAAAAAGTGTTGTATACCTTCTTGTAAAATCCAAGAAGATGATCCTGGCGGTTTGCATTTAAGTTTCTTTCAAATTCCTAAAGATGCAAGTCGAAGAGAAAAGTGGGCTTCAAGTATAAATAATTTCTTCAAGTCTGAAATACAATTTAAGAAATTTGCATATGTTTGTGAGTTACATTTTGAGGAAACAAGTTTCAATAAAGAATTAATGGGAGTGCGATTGAGGCTCAAAAAACAAGCATATCCTACTATATTTCATAATGTCTTATCATGTGATGAAAAAATTAATTTTTTAAATTCCAATATGAATATTGTTAATGATACACCAGTAGAAGAATCCTTTGAAGCCGAAGGTGAAAGATCTCAAAATGTTGCTTCTTACCACCAGAAAACTACCAGAAAAATGAACGATGTATCAAATACATTAATGAAAGATGAAATTGGAAATAATTCTCAAGGATTTTTGGCTGTTATTAAAACAGAAGAAATTAATAATTTTGAGGAATCTAAACTAGAATTCGAAAAATTGTATCGGTTCGACCTTTGTAAGATTAAAACTGAAAACTGTGTAGAAAATTTTTCTCCTACTAACAGTGATCATGTATTAATAAGCAGAGAAAATATAAAAACCGAAAAATTTGATCCAGATGAAGATATTCAAGAAATAAATAGTAATCCCGAAATTAAGATGGAAACATTCGATTTACCTATTTTTAAAAATGATGTCGATGATTTTAGTGAAAAACTACGAACAGAGCAAAATACCGAAATAATTTCTAGGAAAAAATGTTTCCTAACTGCAGCAAAAAAATGGAAACCCCACTTTGGGAAATTCTATGGAACATGTTATTTTTGTGGACAATTTTTCTATCATAAATTATTATTTTTAATCCATTTTTATGTTTACCACTTTTTAGTTAATACTGAAAAATCGGTTACTTCAAGAAAGAGTAAATCTAAAAAATATAATAACCTAAAAGACCTTCAATATGAGATTTGCTCTAAAATATTTCAATGTAACTCGCATTTGAAAAAATCTATTTACAATTCTGTCATAACTAACAAGTCTAAAAATACATTTAATTGCGAAAGTTCCACTCAAAAAAATAATTTAATTATTGGTAATTTAAAAGAACATACCAAGACTAACACTGAACAATCCTTTCAATGTGAAATTTGTTTTAAATGTTACGACAAATCTTATAAATTAAAAAGACATTCTAAAATTCACAGTTGCGAAAATCCTTTCATATGTGAAATTTGTTCAAGATGTTTTACAGAACAAAGTAATTTAAAAAAGCATTTTGTAACTCACACCGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAATTCTTTAAGAAGGCATATTAAAACTCACACTGGTGAAAAATCATACAGATGTGATATTTGTTCAAAATATTTTACCGAACAAAGTAACTTAAAAAAACATATTAGAACTCACACCGGCGAAAAACCTTTTAAATGTAAAACTTGTTCAAAATGTTTCGCACGATCCAATTGTTTAAAAAGACATATGAGAACTCACACTGTTGAAAATCCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACAATGCAAAGTTACTTAAAAAAACATATTAGAATTCACACTGGTGAGAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTTTACGCAATCAAATTCTTTAAAAATACACATTCGAACTCACACCATTGAAAATCTTTTTTAA
- Protein Sequence
- MPKKCCIPSCKIQEDDPGGLHLSFFQIPKDASRREKWASSINNFFKSEIQFKKFAYVCELHFEETSFNKELMGVRLRLKKQAYPTIFHNVLSCDEKINFLNSNMNIVNDTPVEESFEAEGERSQNVASYHQKTTRKMNDVSNTLMKDEIGNNSQGFLAVIKTEEINNFEESKLEFEKLYRFDLCKIKTENCVENFSPTNSDHVLISRENIKTEKFDPDEDIQEINSNPEIKMETFDLPIFKNDVDDFSEKLRTEQNTEIISRKKCFLTAAKKWKPHFGKFYGTCYFCGQFFYHKLLFLIHFYVYHFLVNTEKSVTSRKSKSKKYNNLKDLQYEICSKIFQCNSHLKKSIYNSVITNKSKNTFNCESSTQKNNLIIGNLKEHTKTNTEQSFQCEICFKCYDKSYKLKRHSKIHSCENPFICEICSRCFTEQSNLKKHFVTHTGEKPFKCKICSKCFTQSNSLRRHIKTHTGEKSYRCDICSKYFTEQSNLKKHIRTHTGEKPFKCKTCSKCFARSNCLKRHMRTHTVENPFRCEICSKCFTMQSYLKKHIRIHTGEKPFECKICSKCFTQSNSLKIHIRTHTIENLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056642;
- 90% Identity
- iTF_00056642;
- 80% Identity
- iTF_00056642;