Avir017729.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000999:171763-177868[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.8 2.2e+02 2.0 0.1 24 47 202 225 184 230 0.76 2 5 0.043 3.4 7.8 0.0 21 44 227 250 220 254 0.90 3 5 0.69 54 4.0 0.1 21 45 255 279 252 288 0.87 4 5 0.00094 0.074 13.2 0.0 21 44 311 334 301 338 0.91 5 5 0.54 43 4.3 0.1 21 52 339 370 335 371 0.88
Sequence Information
- Coding Sequence
- ATGGATGTTTACAAAGATGGATCTAACCCAGAAATAAGTAATCAAATTGAAACGGATTCTAAAGGTTTATTATCTAATATTAAATCCGAAGAAATTGATATTTTCGAAAAATCTAAACTTGAATTCGAGAACTTGACGAACTTGTATCAATTCGACTTTTCTAAGATCAAGACGGAAAATTGTGAAGAAAAACTTTCTCCAATTAAGAGTGATATTGTGTTAATAAGAAGAGAAAGCATAAAAACCGAAAATATTGATTCAAAAATGGATATGCAAAAAAGAAAAAGTGATATCGCAATTAATGATTTTGGTGAAAATCGACAAACAGTACAAGCAATCAAAATGTATTCTAGGAAAAAATGTTTCCTGTCTGCGCGAAAAAACTGGCAACGTAACTTTGGAAAATTCCATGGAACGTGTTCTTTTTGTGGACAATTTTTCTTTGATAAATTACTATTTTTAAACCATTTCTATATTTACCACTTATTAGTTAATTCTAAAAAATCTTTTTACACGAGAAGGAATCATTCTACTACAAAACACATTAACCCACCTGATTTTTGTAATTTAAACGAACAGATGAGGACTCACAGTCTACAAAAATCTTTTAAATGCGAAATTTGTTCAAAATGTTTCATAAATTCTTTCGAATTAAAAAAACATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTTACACATGCCGGTAATTTAAAAAGGCATATTATAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAAAGTTAGCTTAAAAGAGCATATTTCAAATCACACTGGTGAAAAACCATTTAAATGTGAAAATTGTTCAAAATGTTTTCCACGACAAACGACATTAAAACTGCATATTAGAATTCACACTGATGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTTACACAATCCGGTAATTTAAAAAGGCATATTATAACTCACACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTCTAAATGTTTCACAGAAAAAAGTAGCTTAAAAGAGCATATAAGACTTCACACTGGTGAAAAGCCATTTAAATGTGAAAATTGTTCAAAATGTTTCCCGCGACAAACGGATTTAAAACAGCATATTAGAATTCACACTAACGAGTAA
- Protein Sequence
- MDVYKDGSNPEISNQIETDSKGLLSNIKSEEIDIFEKSKLEFENLTNLYQFDFSKIKTENCEEKLSPIKSDIVLIRRESIKTENIDSKMDMQKRKSDIAINDFGENRQTVQAIKMYSRKKCFLSARKNWQRNFGKFHGTCSFCGQFFFDKLLFLNHFYIYHLLVNSKKSFYTRRNHSTTKHINPPDFCNLNEQMRTHSLQKSFKCEICSKCFINSFELKKHIRTHTNEKPFKCEICSKYFTHAGNLKRHIITHTGEKPFRCEICSKCFTQKVSLKEHISNHTGEKPFKCENCSKCFPRQTTLKLHIRIHTDEKPFKCEICSKYFTQSGNLKRHIITHTGEKPFKCEICSKCFTEKSSLKEHIRLHTGEKPFKCENCSKCFPRQTDLKQHIRIHTNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057047;
- 90% Identity
- iTF_00057047;
- 80% Identity
- iTF_00057047;