Avir000895.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001094:139702-161795[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.3 1.1e+02 3.1 0.0 18 52 551 585 548 586 0.86 2 7 0.49 39 4.5 0.0 21 48 582 609 580 613 0.85 3 7 0.28 22 5.2 0.0 21 45 610 634 606 642 0.90 4 7 0.46 36 4.6 0.0 21 46 666 691 648 694 0.90 5 7 0.055 4.4 7.5 0.1 21 45 694 718 690 726 0.87 6 7 0.87 69 3.7 0.0 22 45 723 746 718 749 0.90 7 7 1 80 3.5 0.4 25 45 782 802 772 806 0.87
Sequence Information
- Coding Sequence
- ATGGATGATTTCAAAGAAAAAATAAAAATATCTGATATTAAAACCGAAGTAATCGACATTTATGAACAACTTCCACTTAAAATTGAGAATTGTTATGACACTGCCGTAAATCTTAATTTTAATATTAAGGAAGAACGTTTGCCCGAGCTTAAACATGTGGCCGATGTTGAATTACTTTTAGAGGAAACGCCATTTAATTCTGAAGATCCAATAATGGCAGAATCTAAAAATTCTGATAAATCTTCTAATGCAATTATGGAACAAGTTGATGTCCATCATCGTGATTGTTCACAACTCAGTGCATCAATCACTACCACAAGCCATGTCTGTGCGAATGAAACTCGAGCAACGAGTGATCTTTCTTCAATCCAACGTGGTTATCCAAAAACAGCTGCAGAGCGAATGCGAGAGTATAGAGCTCGGAAAAAGAAGGAAACTCCAATATTGAATTATCGGAAACATAGAAAATCAGACGCAGAGCGTGCAAAAGAGTATAGAGCCCGAAAAAAAGCGAAGATCCAATCAGCAGCTCAAGCAATGGATGATTCTAAAGAAAAAATGAAAATATTTGATATTAACACCGAAGACATCAACATTTATGACCAACTTGCACTTAAAATTGAGAAGTGTTATGAAACTGACGTGAATATTAAGGAAGAAATATGTGATTTTCCCGAGCTTATACATGATGGTGAAATACTTTTAGAGGAAACGTCATTTAATTCTGAAACTCAAGCAATAGTTAAAGAAAAATTGAAAATATCTAATATTAAAACCGAAGAAATTTATGAACAACTTTCACTTAAAATTGAGAATTGTTATGAAACTGGCATGAATCTTGACTTTAATATTAAGGAAGAAAGTTTGCACAGAGTATGTGATTTACCATATGTTAAACATGAAGCAGATGGTGAAATACTTTTAGAGAAAACGTCATTTAATTCTGAATATTCTACGATGGCAGAATCCAAAAAATCTGATGAAACTTCCAATGCAATTATAGTACAAGGTGATGTCCCTCATCGTGCTTGTTCACAACTCAGTGCATCAATCGCTACCACAAGCCATGTTTGTGTGAATGAAACTCAAACAACGAGTGATCTTTCTTCAATCCACCGTGGTTATCCAAAAACAGCTGCAGAGCGAATGCGAGAGTATACAGCTCTGAAAAAGAAGGAAACTCCAATAGTGAATTATCGAAAACATAGAAAATCAGACGCAGAGCGTGCAAAAGAGTATAGAGCCCGAAAAAAAGCGAATATCCAATCAGCAGGTTTTCTATCTACTCAAAAAAAAACAAAATATTGTGGGAAATATCGAACCTGTTACTTCTGTGGAAGAATTTTTGTTCATAAACTACTGTTTATTGATCATTTCTATGTATACCACTTTTCACATCGTAAAACAAAAGCTGTTAAAGTTAGAAAGAATATTTGTATCAAGAAATGCAAAAGAAAACGATTAAATCTAAAACATATTTATTACGAGATTTGTTCGAAAATGTCTGAGCAAACAGTGGTTAAAAATGGGAAACCAGCTTTTCGTGACTATGAAAAGGTCACAGAAAATTTTAGATACAAAAAGAAACTGAATTACGTTACATTTCAATACAGTGGGAAACGAGGTAAATCTTTTATAGCAAATAATCTACGAAGCATTGATGAAAAATTGTTTAAATGTTGTATTTGTTTAAAACTTCTTACTAGCAATAGTAGTTTAAAAGATCACTTAAAAATACACACTGGTGAAAAACCGTTTAATTGTGACATTTGTTTAAAACTTTTCACACGCAAAAGTGATTTAAAAAAACATGTAAGAATTCACACTGGAGAAAAACCCTTTAAATGTAATATTTGTTCATTAAGTTTCACACAATCAACAAGTTTACAAACACATATGACAACTCACACTGGAGTAAAATCTTTCAAATGTGATATCTGTTCAAAACGTTTAAAAAGCAAAACTAGTTTAACAAGACATTTTAAAATTCACACTGGTGAAAAACCGTTTAAATGCTATATTTGCTCAAAGTTTTTCGCTCAGAAAAATGATTTAAAAATACATCTAAGAATTCACACTGGTGAAAGACCGTTTAAATGTAATATTTGTTCAAAAGGTTTCACACAATTGGCAAATTTACAACGTCATGTTACAGCTCACACTGGTGATAAACCTTTCAAATGTGATATTTGTTCAAAACTTATTACAAGCAAAGTTATTTTAAACAGACATCTAAAAAGTCACACCGGTGAAGAACCGTTTAAATGTTACGTGTGTTCAAAAGTTTTCATAAATAAAACTGCTTTAGAAATACATCAAAGAATTCACACTGGTGAAAAACTATTCAATTGTTGTATTTGTTTAAAACATTTTACACTATCAGTAAATTTACAAAGGCATATGAGAACTCACACTGGTGAAAAAACTTTCAAATGTGATATTTATTGA
- Protein Sequence
- MDDFKEKIKISDIKTEVIDIYEQLPLKIENCYDTAVNLNFNIKEERLPELKHVADVELLLEETPFNSEDPIMAESKNSDKSSNAIMEQVDVHHRDCSQLSASITTTSHVCANETRATSDLSSIQRGYPKTAAERMREYRARKKKETPILNYRKHRKSDAERAKEYRARKKAKIQSAAQAMDDSKEKMKIFDINTEDINIYDQLALKIEKCYETDVNIKEEICDFPELIHDGEILLEETSFNSETQAIVKEKLKISNIKTEEIYEQLSLKIENCYETGMNLDFNIKEESLHRVCDLPYVKHEADGEILLEKTSFNSEYSTMAESKKSDETSNAIIVQGDVPHRACSQLSASIATTSHVCVNETQTTSDLSSIHRGYPKTAAERMREYTALKKKETPIVNYRKHRKSDAERAKEYRARKKANIQSAGFLSTQKKTKYCGKYRTCYFCGRIFVHKLLFIDHFYVYHFSHRKTKAVKVRKNICIKKCKRKRLNLKHIYYEICSKMSEQTVVKNGKPAFRDYEKVTENFRYKKKLNYVTFQYSGKRGKSFIANNLRSIDEKLFKCCICLKLLTSNSSLKDHLKIHTGEKPFNCDICLKLFTRKSDLKKHVRIHTGEKPFKCNICSLSFTQSTSLQTHMTTHTGVKSFKCDICSKRLKSKTSLTRHFKIHTGEKPFKCYICSKFFAQKNDLKIHLRIHTGERPFKCNICSKGFTQLANLQRHVTAHTGDKPFKCDICSKLITSKVILNRHLKSHTGEEPFKCYVCSKVFINKTALEIHQRIHTGEKLFNCCICLKHFTLSVNLQRHMRTHTGEKTFKCDIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057084;
- 90% Identity
- iTF_00057084;
- 80% Identity
- iTF_00057084;