Avir003967.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001617:49903-51111[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.033 2.6 8.2 0.1 22 51 5 34 2 36 0.84 2 12 0.076 6 7.0 0.1 21 44 32 55 30 59 0.91 3 12 0.45 35 4.6 0.1 21 45 60 84 56 91 0.85 4 12 3.9 3.1e+02 1.6 0.3 22 48 89 115 84 121 0.86 5 12 9.6 7.6e+02 0.3 0.2 21 44 145 168 139 172 0.85 6 12 0.063 5 7.3 0.0 21 46 173 198 166 203 0.85 7 12 0.61 49 4.1 0.1 22 48 202 228 199 232 0.83 8 12 0.044 3.5 7.8 0.1 21 45 229 253 225 260 0.87 9 12 4.2 3.3e+02 1.5 0.1 22 47 258 283 252 288 0.85 10 12 0.73 58 3.9 0.2 22 45 315 338 306 345 0.85 11 12 0.47 37 4.5 0.1 21 46 342 367 337 369 0.85 12 12 0.14 11 6.2 0.1 22 44 371 393 368 397 0.90
Sequence Information
- Coding Sequence
- ATGATTCACACTGAAAAATCGTTCAGATGTGAAATTTGTTTAAAATGCTTCCGACAACAAGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAAAACTCATATTAGAACTCACACTGGCGAAAGACCATTTAAATGTGAAATTTGTGAAAAATGTTTCATAAAAACTACTGATTTAAAACGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATAGAAGATTAAAAAATCATCTTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTACAAACTACAAAATGATTTAAAACTACATATTAGAACTCACACTGCCGATAAACCATTTAAATGTAAAGTTTGTACGAAATGTTTTCACCATTCCACTCATTTAAACATTCATATGAGAAGTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCCGGTGATTTAAATATTCATATGAGAATTCACACTGGCGAGAAATCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCCGGTTATTTAAAAACGCATATTAGAATTCACACTGGTGAAAAACCGTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCGGTGATTTGATAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATAGAGGATTAAAAAATCATCTTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTTCACACTACAAAATGATTTAAAACAACATATTAGAACTCACACTGGCGATAAACCTTTTAGATGTAAAGTTTGTACGAAATGTTTTCACAATTCCACTAATTTAAACATTCATATGAGAAGTCACACTGGTGAAAAACCTTTTAAATGTGAAATGTGTTCAAAATGTTTCACACACCAAAGTAATTTAAAACAACATATTAGAATTCACACTGGTGAGACACCTTTTGAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAAAACTCATATTAGAACTCACACTGACGAGAAAGCATTTTAA
- Protein Sequence
- MIHTEKSFRCEICLKCFRQQGDLKKHIRIHTGEKPFECKICSKCFTQSSSLKTHIRTHTGERPFKCEICEKCFIKTTDLKRHTRTHTGDKPFRCEYCSKCFTENRRLKNHLIRDHTGEKSFKCEICLKCYKLQNDLKLHIRTHTADKPFKCKVCTKCFHHSTHLNIHMRSHTGEKPFKCEICSKCFTQSGDLNIHMRIHTGEKSFKCEICSKCFTQSGYLKTHIRIHTGEKPFRCEICSKCFTQSGDLIRHTRTHTGDKPFRCEYCSKCFTENRGLKNHLIRDHTGEKSFKCEICLKCFTLQNDLKQHIRTHTGDKPFRCKVCTKCFHNSTNLNIHMRSHTGEKPFKCEMCSKCFTHQSNLKQHIRIHTGETPFECKICSKCFTQSSSLKTHIRTHTDEKAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056835;
- 90% Identity
- iTF_00056835;
- 80% Identity
- iTF_00056835;