Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001431:74015-78140[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.4 32 4.7 0.1 26 47 247 268 240 274 0.85

2 11 2.3 1.9e+02 2.3 0.6 22 50 271 299 266 302 0.84

3 11 0.12 9.2 6.5 0.1 22 51 355 384 350 385 0.86

4 11 0.0022 0.17 12.0 0.4 21 51 382 412 379 414 0.87

5 11 0.25 19 5.4 0.1 21 48 438 465 427 470 0.85

6 11 2.4 1.9e+02 2.2 0.0 21 46 466 491 462 494 0.88

7 11 0.093 7.4 6.8 0.1 21 51 494 524 490 526 0.86

8 11 0.006 0.47 10.6 0.1 22 46 523 547 520 553 0.86

9 11 0.036 2.9 8.1 0.1 21 45 550 574 546 578 0.91

10 11 1.1 84 3.4 0.1 22 44 579 601 574 605 0.87

11 11 3.5 2.8e+02 1.7 0.6 21 48 606 633 601 634 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.4	32	4.7	0.1	26	47	247	268	240	274	0.85
2	11	2.3	1.9e+02	2.3	0.6	22	50	271	299	266	302	0.84
3	11	0.12	9.2	6.5	0.1	22	51	355	384	350	385	0.86
4	11	0.0022	0.17	12.0	0.4	21	51	382	412	379	414	0.87
5	11	0.25	19	5.4	0.1	21	48	438	465	427	470	0.85
6	11	2.4	1.9e+02	2.2	0.0	21	46	466	491	462	494	0.88
7	11	0.093	7.4	6.8	0.1	21	51	494	524	490	526	0.86
8	11	0.006	0.47	10.6	0.1	22	46	523	547	520	553	0.86
9	11	0.036	2.9	8.1	0.1	21	45	550	574	546	578	0.91
10	11	1.1	84	3.4	0.1	22	44	579	601	574	605	0.87
11	11	3.5	2.8e+02	1.7	0.6	21	48	606	633	601	634	0.82

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAAAAGCATCAGATTCATTAATGAATAATAAAATCGAGAGTAATCCTAAAGAACCGTTGTCTAATATTAAAACGGAAGAAATTGAAATTGAAGAATGTAAACTCGTATTTGAGAACTTGCATCAAATTGACTTTTATACGATGAAAAGGGAAAGTTCTGAAGAAAAAGTTTCTCTAACTAAAAATGATGTTCGGTTAATACGAACAGGAAATATAAAAACTGAAAATGTTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATATCGAAATTAAGACAGAAATTATACAGAGTACATTTGATTTTTCTGTTTGTACAAAAAGTATCTATGATTTTGTTGAAGTAGGACAAACTCTGCAAACAATTAAAATGTACTCTAGGAAAAAATGTTTCCTATCTGTGCCAAAAAAATGGCAACCTCACTTTGGGAAATTCTATGGAACATGTTTATTTTGTGGACAATTTTTCTGTGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTGTAAAAAATCTGTTAACTTGAGAAGGGATAATTCTGCTACAAAACACTTTAACCTAAAAGATCTTAGTAAAGTAAACGGACAGATGAGAACTGACAGTAAACAAAAACCTTTTAAATTTGAAATTTGTTCAAAATATTTCACACAAAAAAATGTCTTAAAAAAACATATTATTAGAGCTCACACTGGTGTAAAGGCATTCAAATGTGAAATTTGTTTAAAATGTTTCACACAACAAAGTGATTTAAAACGACATATGAGAACTCACACTCGAGACAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTAGAAACCAATTTTGTTTAAAAAGTCATATTAGAATTCACACTGGTGAAAAACCTTTCAAATGTAAATTTTGTACAAAATCTTTCACACATTCCTGTAAATTAAAAACTCATGTTAGAAGTCACACTAAGGGGAAATCTTTAAAATGTAAAATTTGTTCAAAATGTTTCCAAGACCAAACTTATTTAATACATCATATTAAAATTCACACTGACAAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAAAGATCTAGTCATTTAACAAGGCATGTTGGAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCAAGTCATTTAAAAAGGCATGTTAGAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATGTGTTCAAAACATTTCACGCGACTACATACCTTAAAAGAACATATTAGAATTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTTACAAAATCTAGTCATTTAAAAATTCATGTTAGAATTCATACTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAACGTTTTATGGACTTCACTAATTTAAAAACACATATTAGAATTCACAATAACGAGAAACCCTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGACCAAAGTAATTTAAAACAGCATATTAGAATTCACACTGACGACAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCCAATGATTTAAAAAGGCATATTAGAACTCACACTGGTGAGAAACCTTACAAATGTGAGATTTGTTCAAAATGTTTCACAGAATCCAAAGTTTTAAAAAGGCATATTAAAACTCACACTGGTGAAAAAGCTTTCAGATGTGAGATTTGTTCAAAATGTTTTATAGAATCCAATGATTTAAAAAGACATATTAGAAGTCACACCGGGGAAAGACCTTACAGATGTGAGATTTGTTCAAAATGTTTCTCGCGAAAGACTGCCTTAAAAAATCATATAACAAAAAATCATATTTGA
Protein Sequence: MDGFKKASDSLMNNKIESNPKEPLSNIKTEEIEIEECKLVFENLHQIDFYTMKRESSEEKVSLTKNDVRLIRTGNIKTENVNSNEGIQERKSDIEIKTEIIQSTFDFSVCTKSIYDFVEVGQTLQTIKMYSRKKCFLSVPKKWQPHFGKFYGTCLFCGQFFCDKLLFLNHFYIYHFLVNCKKSVNLRRDNSATKHFNLKDLSKVNGQMRTDSKQKPFKFEICSKYFTQKNVLKKHIIRAHTGVKAFKCEICLKCFTQQSDLKRHMRTHTRDKPFKCKICSKCFRNQFCLKSHIRIHTGEKPFKCKFCTKSFTHSCKLKTHVRSHTKGKSLKCKICSKCFQDQTYLIHHIKIHTDKKPFKCKICSKCFKRSSHLTRHVGIHTNEKPFKCEICLKCFTQSSHLKRHVRIHTGEKPFKCEMCSKHFTRLHTLKEHIRIHTNEKPFKCKICLKCFTKSSHLKIHVRIHTDEKPFKCEICSKRFMDFTNLKTHIRIHNNEKPFKCKICSKCFTDQSNLKQHIRIHTDDKPFKCEICLKCFTQSNDLKRHIRTHTGEKPYKCEICSKCFTESKVLKRHIKTHTGEKAFRCEICSKCFIESNDLKRHIRSHTGERPYRCEICSKCFSRKTALKNHITKNHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056844;
90% Identity: iTF_00056844;
80% Identity: iTF_00056844;