Avir010920.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000044:129559-136845[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.039 3.1 8.0 0.1 27 51 196 220 191 222 0.86 2 10 0.69 55 4.0 0.1 18 44 242 269 234 273 0.79 3 10 0.049 3.8 7.7 0.1 21 51 274 304 269 307 0.85 4 10 9.7 7.7e+02 0.3 0.1 21 44 302 325 299 328 0.81 5 10 0.0031 0.24 11.5 0.0 18 46 326 355 316 362 0.81 6 10 0.63 50 4.1 0.1 21 46 386 411 377 417 0.83 7 10 0.72 57 3.9 0.0 22 46 415 439 411 447 0.85 8 10 1.2 97 3.2 0.1 21 46 470 495 461 501 0.83 9 10 0.13 10 6.3 0.1 21 45 498 522 494 529 0.86 10 10 0.64 51 4.1 0.0 21 46 526 551 522 556 0.89
Sequence Information
- Coding Sequence
- ATGGATGGTTTCAAAGAAGCATCAGATTCATTAATGCATAATAAAATCGAAAGTAATCCAAAAGAACTGTTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTAATCTCGAATTCGAGAACTTGCATCAAATTGACTATTATATGATGAAAAGGGAAAGTTCTGAAGAAAAAGTTTCTCTAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAGTGGTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGTGATAACGAAATTAAGAAATATGATTTCCCTGTTTGTATAAAAGCTATCCGTGATTTTGTTGAAGTAGGACAAACTGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTTTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTGGGAAATTTTATGGAACATGTTTCTCTTGTAGACAATTTTTTTGTGATAAATTGTTATTTTTAAACCATTTTTATATATACCACTTTTTAGTTAATTCCAAAAAATCTGTTAACTTAAGAAAGAATAATTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGAAATTTGTACAAAATGTTTCACCCAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACAGAAGCCACTGAATTAAAAGGGCATATTAGAAGTCACACAGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCATAAAACCTAGTAATTTAAAACTTCATGTTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCCAGTAAATTAAAAAGGCATGTAATAATTCACACTAACGAGAAACCTTTTCAATGTGAAATTTGTTCAAAATGTTTTACAGGAGCAACTGAATTAAAAGGGCATATTAGAAGTCACACAGGTGAAAAACCTTTTAAATGTAAAATGTGTTCAAAATGTTTCACAAAATCTAGTAATTTAAAACGGCATGTTAAAACTCACACTGACGAAAAACCTTTTCGATGTGAAATTTGTTCGAAATGTTTTACACGATTTGATCATTTAAAAACGCATGTTAAAAATCACAGTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGGACAAAATCATTTAAATCGACATGTTAATACTCATACTGGTAAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCACACAATCCAGTGGCTTAAATACTCATATTAGAACTCATACTGGTGAAAAACCTTACAAATGTGAGATTTGTTCAAAATGTTATACACGATTTGATCATTTAAAAACGCATGTTAAAATTCACAGTAACGAGAACCCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAGGACAAAGTCATTTAAATCGACATGTTAATACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTCACACAATCCAGTAGCTTAAATACTCATATTAGAACTCATACTGGTGAAAAACCTTATAAATGTGAAATTTGTTCAAAATGTTTTACACGATTTGATAATTTAAAAACGCATGTTAAAATTCACAGTAAAAGTGCCAGCCCCTAA
- Protein Sequence
- MDGFKEASDSLMHNKIESNPKELLSNIKTEEIEIEECNLEFENLHQIDYYMMKRESSEEKVSLTKSDVLISTENIKTESGNSNEGIQERKSDNEIKKYDFPVCIKAIRDFVEVGQTVQTIKMYSRKKCFLSVPKKWQPHFGKFYGTCFSCRQFFCDKLLFLNHFYIYHFLVNSKKSVNLRKNNSDKKHIGQMFFKCEICTKCFTQSSDLKRHIRIHTDKKPFKCEICSKCFTEATELKGHIRSHTGEKPFKCKICSKCFIKPSNLKLHVRTHTGEKPFKCEICSKCFIESSKLKRHVIIHTNEKPFQCEICSKCFTGATELKGHIRSHTGEKPFKCKMCSKCFTKSSNLKRHVKTHTDEKPFRCEICSKCFTRFDHLKTHVKNHSNEKPFKCKICSKCFTGQNHLNRHVNTHTGKKPFKCEICSKCFTQSSGLNTHIRTHTGEKPYKCEICSKCYTRFDHLKTHVKIHSNENPFKCKICSKCFTGQSHLNRHVNTHTGEKPFKCEICSKCFTQSSSLNTHIRTHTGEKPYKCEICSKCFTRFDNLKTHVKIHSKSASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056856;
- 90% Identity
- iTF_00056856;
- 80% Identity
- iTF_00056856;