Avir003310.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000148:556460-560898[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.57 45 4.2 0.2 22 45 284 307 277 310 0.87 2 6 0.86 68 3.7 0.0 21 48 339 366 332 370 0.82 3 6 0.01 0.8 9.9 0.1 21 51 367 397 363 400 0.87 4 6 0.013 0.99 9.6 0.1 21 47 423 449 415 454 0.85 5 6 0.73 58 3.9 0.0 21 46 451 476 446 478 0.90 6 6 0.82 65 3.7 0.1 22 45 480 503 477 507 0.90
Sequence Information
- Coding Sequence
- ATGAAATTCCAGATCATCGTTCAGATCTATTGTTACAAAAAATTAAAACTGAAAAAAATCGATTTATTTGAGAATGAAACAATTAAAAGTGAATATTCTGAGCAAAGTTCTAATCTTTTAGGGATTCGAGATACTATTGAAGCTGATTGTAGAATAAATATCAAGAATGACGTGAATGTTAAAGATGAGGTCATTGAAATTCAACTTAAAAAAGAACATATATCTGATACGAAAATAGAAATTGATGGTCATGCTGAATGTGATATAAAACAATTACATCGAAAGAGGAAACATCTTTTAAAGTACCAATGTCCATTTTGTACAAAATGTTACTCGTCCTGGACAAAACGAGCAAAATGTGGTTGTGGGAGATACTCTGAGAAGTGTTTTTATTGTGGGCAATTTTTTTCCCATAAATTACAATTTTTAACTCATTTTATTGTAAACCACTATCTAAAATATAGGACAAGAACTGGGAAACTAAGTAATTGCAAATATACAAAGAAACACATTGATGCCAAACAACTTCAGTTTGAGATTTGCTCAATTTTTTTTGAGAAAAGGCAAAATTTTAATGTAGGCAATAAAAATACTAAAAGAAATTCATTTAAATACAAAAATCTACGAAGGCGAAAAAGATTTCTTATGCATTATGAATTTAGTTCCACAATTAACAGAGTAGTTTTTCTGTATAGCTGTAAAATTTGTTCGAAATCATTTATAACAAAAAGTCAACTACAAGCACATATTAGAAGTCACACTGGAGACAAACCTTTCAGATGTAATTTCTGTACTAAAATGTTTACAAGGAATTATTATTTTCAAGTACATATGAGAATGCATACGAATGAAAAACGATTTAAATGTGAAATTTGTCATAAAGTATTCTCATGTAATAGCAATTTAAAATCACATATGAAATGTCACACTGGAGTTGGAGTAATGAAATGTGACATTTGTTCAAAGATATGTATAACAAACAATCATTTAGTCTCACATATGAGAACTCATACCGGAGAGAAACCTTTTAATTGCGAAATTTGTTCAAAATCTTTTGCAGTTACTGGAAGTTTAAATAGACACATGAGAATTCATACTGGAGAAAAACCTTACAGTTGTACCATTTGTTTGAAAGCGTTTAATGAAAGTAGTGTTTTAAAGAGACATATGAGAGTTCATAGTGGAGAAAAACCATTTGCATGTGAAGTTTGTTCCAAAACGTACACTCACAAAGATAAATTAAAATTACATATGAGAAATCACACTGGCGAAAAACCGTATACATGTACTGTATGTTCAAAAAAATTTACACAAAGCGAACATTTAAAACAACATACTAGAATTCACACCGGAGAAAAACCATTTAAATGTGAAATTTGTTCAAAAACCTTTTATAGTACCGGTAATTTAATACAGCATTTACGAATACATACCGGTGAAAGACCATTTATTTGTAACGTTTGTTCTAAAACTTTTAAAGTTAAAAGAAGTTTACAACAACACATGAAAACTCATCAAGCCGTCCTTATAGAGTAA
- Protein Sequence
- MKFQIIVQIYCYKKLKLKKIDLFENETIKSEYSEQSSNLLGIRDTIEADCRINIKNDVNVKDEVIEIQLKKEHISDTKIEIDGHAECDIKQLHRKRKHLLKYQCPFCTKCYSSWTKRAKCGCGRYSEKCFYCGQFFSHKLQFLTHFIVNHYLKYRTRTGKLSNCKYTKKHIDAKQLQFEICSIFFEKRQNFNVGNKNTKRNSFKYKNLRRRKRFLMHYEFSSTINRVVFLYSCKICSKSFITKSQLQAHIRSHTGDKPFRCNFCTKMFTRNYYFQVHMRMHTNEKRFKCEICHKVFSCNSNLKSHMKCHTGVGVMKCDICSKICITNNHLVSHMRTHTGEKPFNCEICSKSFAVTGSLNRHMRIHTGEKPYSCTICLKAFNESSVLKRHMRVHSGEKPFACEVCSKTYTHKDKLKLHMRNHTGEKPYTCTVCSKKFTQSEHLKQHTRIHTGEKPFKCEICSKTFYSTGNLIQHLRIHTGERPFICNVCSKTFKVKRSLQQHMKTHQAVLIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056954;
- 90% Identity
- iTF_00056954;
- 80% Identity
- iTF_00056954;