Avir010952.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000441:376138-381890[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0035 0.28 11.3 0.2 21 44 105 128 97 132 0.92 2 4 0.011 0.87 9.8 0.2 20 48 132 160 129 164 0.87 3 4 0.01 0.8 9.9 0.0 21 46 161 186 159 193 0.86 4 4 3.3 2.6e+02 1.8 0.1 21 32 189 200 185 202 0.84
Sequence Information
- Coding Sequence
- ATGAAAAATAATTCAAAACAAGGTTTCCTGTCTGCGGCAAAAAAATGGCATCCTCAATTTGGTAAATACTATGGAAGCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTCAACCATTTTTATATTTACCACTTTTTAGTTAATTGTATAAAATCTGTTAACTTGAGAAAGAGTAATTCTACTACAAAACATATTAACCTAAAAGATTTTGGTAATTTAAAAGAACAGATGAGGACTTACAGTGGACAAAACAGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAAAACTCACATTAGTGAAAAACCGTACAAATGTGAAATTTGTTCAAAATGTTTTATACAATCCAAACATTTAAAAACTCATATTAGAACTCACACAAGCGAAAAACCTTTTAGATGTGAAATTTGTTCGAAATGTTTTAAACACTCATGTGAATTAAAAGTTCATATTAAATTTCACACTGGTGAAAAACCGTTTAAATGTCAAATTTGTTCAAAAAGTTTTATACAATCCAGTGATTTAAAAAAACATATTAGAACTCACACAGGTGAAAAACCTTTCCAATGTGAAATTTGTTTCAAAATGTTTTAA
- Protein Sequence
- MKNNSKQGFLSAAKKWHPQFGKYYGSCSFCGQFFCDKLLFFNHFYIYHFLVNCIKSVNLRKSNSTTKHINLKDFGNLKEQMRTYSGQNSFKRQKDLKQHIKTHISEKPYKCEICSKCFIQSKHLKTHIRTHTSEKPFRCEICSKCFKHSCELKVHIKFHTGEKPFKCQICSKSFIQSSDLKKHIRTHTGEKPFQCEICFKMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057210;
- 90% Identity
- iTF_00057210;
- 80% Identity
- iTF_00057210;