Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001175:37630-42467[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.052 4.1 7.6 0.1 21 48 239 266 231 272 0.86

2 11 0.8 64 3.8 0.3 21 48 295 322 287 326 0.82

3 11 0.053 4.2 7.6 0.2 21 52 323 354 319 356 0.88

4 11 4.2 3.3e+02 1.5 0.0 21 48 351 378 348 382 0.86

5 11 0.36 28 4.9 0.0 21 48 379 406 375 410 0.86

6 11 0.0099 0.79 9.9 0.1 21 45 407 431 405 438 0.87

7 11 0.7 55 4.0 0.1 22 44 436 458 430 462 0.89

8 11 0.14 11 6.2 0.1 21 46 463 488 458 495 0.81

9 11 1.6 1.3e+02 2.8 0.0 21 46 548 573 540 580 0.83

10 11 1.6 1.3e+02 2.8 0.1 21 48 576 603 572 607 0.83

11 11 0.1 8.1 6.6 0.1 21 44 604 627 600 631 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.052	4.1	7.6	0.1	21	48	239	266	231	272	0.86
2	11	0.8	64	3.8	0.3	21	48	295	322	287	326	0.82
3	11	0.053	4.2	7.6	0.2	21	52	323	354	319	356	0.88
4	11	4.2	3.3e+02	1.5	0.0	21	48	351	378	348	382	0.86
5	11	0.36	28	4.9	0.0	21	48	379	406	375	410	0.86
6	11	0.0099	0.79	9.9	0.1	21	45	407	431	405	438	0.87
7	11	0.7	55	4.0	0.1	22	44	436	458	430	462	0.89
8	11	0.14	11	6.2	0.1	21	46	463	488	458	495	0.81
9	11	1.6	1.3e+02	2.8	0.0	21	46	548	573	540	580	0.83
10	11	1.6	1.3e+02	2.8	0.1	21	48	576	603	572	607	0.83
11	11	0.1	8.1	6.6	0.1	21	44	604	627	600	631	0.91

Sequence Information

Coding Sequence: ATGGATGGTATCAAAGAAGCATCAAATCCATTAATGAATATCGAAATCGAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACCGAAGAAATTGATATTGAAGAATGTAAACTCGAATTCGAGAACTTACATCAAATAATGAAAATGGAAAATTCTGTCGAAAAAGTTTCTTCAACTAAAAGCAAAGTTGTGTTAATAAGCACAGAAAATATAAAAACTGAAAATGTTGATACAAATAAAGATATTGAAGAAAGAAAATGTGATATTGGAATCAAAATAGAAGCTGCATTTGATTTCCATGCAATCCATGATTTTGTTAAAAATCGACAAACGGGGCAAACAATCAAAATGTATTCTAAGAAAAAAAGTTTCCTATCTGCGGCAAAAAAATGGCATTATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTTTTATTTTTACATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAAACTGTTGATTTGAATTCGGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAAATCAAAATTATTTAAATCAGCATATTATACTTCACACTGGTGAAAAATTGTTCAAATGTGAATATTGTTCGAAATGTTTCACAAAATCTAAGCGTTTAAAAAGTCATGTTAAAATTCACACTAACGAAAAACCTTTTAAATGTGAATTTTGTTCAAAATGTTTCACAAATTCCAGTAATTTAAATAGGCATATTAGAACTCACACTAACGAGAAACCTTTCAAATGTGAATTTTGTTCAAAATGTTTCACAGATCGCAGTAATTTAACAAATCATATTAAAAGTCACAATAACGACAGCCCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACACCAAAGTAATTTACAACAACATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACATCTAGTGTTTTAAAAAGGCATATTAGAATTCACACTGGTGAGAAACCTTTTATATGTAAAATTTCTTCAAAATGTTTCGTACAATCCGGTGATTTAAATAACCATATTAAAATTCACACTGATGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCACAAAATCCGTTGATTTAAAAAATCATATTAGAATTCACACTGGTGAAAAACCATTCAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCGGTAATTTAATAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAAATGTAAAGTTTGTACGAAATGTTTTCACAATTCCACTAATTTAAAAATTCATATGAGAAGTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTGAAAAATGTTTCATAAAAACTTCTGATTTAAAAAGGCATATTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATGGAAGCTTAAAACAGCATATTATTAAATATCACAGTGGTGAAAAATCATTCAAATGTGAAATTTGTCTAAAATGTTACAAACTAGAAAATGATTTAAAACATCATATTAGAAATCACACTGCAGATAAACCTGTTAAATGTAAATTTTGTTCAAAATTTTTCAAAAGACAAAGTGATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGAACAAAGTACTTTAAAACAACATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCGAGTAGCTTAAAAACTCATATTAGAACTCACACTGACGAGAAAGCATTTTAA
Protein Sequence: MDGIKEASNPLMNIEIESNPKELLSTIKTEEIDIEECKLEFENLHQIMKMENSVEKVSSTKSKVVLISTENIKTENVDTNKDIEERKCDIGIKIEAAFDFHAIHDFVKNRQTGQTIKMYSKKKSFLSAAKKWHYHFGKFNGTCLYCGQFFCDKFLFLHHFSIYHFIVKSKKTVDLNSATKHIGQISFKCEICSKYFKNQNYLNQHIILHTGEKLFKCEYCSKCFTKSKRLKSHVKIHTNEKPFKCEFCSKCFTNSSNLNRHIRTHTNEKPFKCEFCSKCFTDRSNLTNHIKSHNNDSPFKCEICSKCFTHQSNLQQHIRIHTGEKPFKCEICSKCFTTSSVLKRHIRIHTGEKPFICKISSKCFVQSGDLNNHIKIHTDEKPFKCEICSKYFTKSVDLKNHIRIHTGEKPFRCEICSKCFTQSGNLIRHTRTHTGDKPFKCKVCTKCFHNSTNLKIHMRSHTGEKPFKCKICEKCFIKTSDLKRHIRTHTGDKPFRCEYCSKCFTENGSLKQHIIKYHSGEKSFKCEICLKCYKLENDLKHHIRNHTADKPVKCKFCSKFFKRQSDLNRHVKTHTGEKPFKCEICSKCFTEQSTLKQHIRIHTGEKPFKCKICSKCFTQSSSLKTHIRTHTDEKAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056809;
90% Identity: iTF_00056809;
80% Identity: iTF_00056809;