Avir003966.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001617:64917-70195[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.7 3.7e+02 1.3 0.3 26 47 191 212 187 216 0.86 2 10 0.5 40 4.4 0.0 21 44 242 265 234 269 0.90 3 10 0.32 25 5.1 0.3 23 45 272 294 267 303 0.86 4 10 2.6 2e+02 2.2 0.1 21 44 355 378 346 382 0.79 5 10 0.079 6.3 7.0 0.0 21 48 383 410 379 414 0.87 6 10 0.0045 0.35 11.0 0.1 21 50 411 440 407 442 0.87 7 10 0.073 5.8 7.1 0.0 21 47 439 465 436 472 0.86 8 10 1.3 1e+02 3.1 0.0 22 51 496 525 490 528 0.84 9 10 0.032 2.5 8.3 0.1 21 45 551 575 543 582 0.87 10 10 3.1 2.5e+02 1.9 0.2 22 44 580 602 574 609 0.85
Sequence Information
- Coding Sequence
- ATGGATGGTTTTAAAGAAGCATCAGATTCATTAATGAATAATATAATCGAAAGTAATCCTAACGAACTATTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTCAACTCGAATTCGATAACTTGCATCAAATTGAGTATTATATGATGAAAAGGGAAAGTTGTGAAGAAAATAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATTTTAATTCAAATGAGGGTATTCAAGAAAGAAAAATCGATATCGAAATGAAGAAATTTGATTTCCCTATTTGTACAAAAGCTATCCATGATTTTGTTGAAAACCGACAAACAGTGCAAACAATCAAAATGTATTCAAGGAAAAAATGTTTCCTATCTGCGACAAAAAAATGGCATCATAATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTACATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATGTTTTAAAAAGCAAAGTAATTTAAAAGAGCATAATAGACTTCACACTTGTAAAAAATTATTTAAATGTGAATATTGTTCGAAATGTTTCACAAAATCCAAGTGTTTAAAAATGCATGTTAGAATTCACACTGGTGAAAAACCTTTTGAATGTGAAATTTGTTCAAAATGTTTCAAAACATCTAGTCATTTAAAAAATCATGTTAAAAGTCACACTGGCGTAAGACCATTTAAATGTGAAATTTGTGAAAAATGTTTCAAAACATCTCATCATTTAAAAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAAGATTGTTCAAAGTGTTTCACAGAAAATAGAAGCTTAAAACAGCATATTATTAGAGATCACACTGGTGAAAAGTCATTGAAATGTGAAATTTGTTTAAAATGTTTCACACTACAAATTGATTTAAAACAACATATTAGAACTCACAGTAACGAGAAACCTTTTAAATGTAAAGTTTGTTCAAAATGTTTCACAGGACAAAGTAAATTAAATAGACATGTTAAAACTCATACCGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGATTCCAGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCGAAGTATCCGGTAATTTAAAAAGGCATATTAAAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCAAAACATCTACTGATTTAAAAAAGCATGTTAGAACTCACAATGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACACAATTTGGTGATTTAAACATTCATATGAGAATTCACACTGGCGAGAAATCTTTTAAATGTGAAATTTGTTCAAAATATTTCACACAATCCGGTTATTTAAAAACGCATATTAGAATTCACACTGGTGAAAAACCTTTTAAATGTCAAACTTGTTCAAAATGTTTCACACGATTTAGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCACACAATCGAGTGATTTAAAAAAGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAGATTTGTTCAAAATGTTTCACAGAAAAAAGAAGCTTAAAGCCGCATATTATTAGATACCACTCTAACGAAAAAGCATTTTAA
- Protein Sequence
- MDGFKEASDSLMNNIIESNPNELLSNIKTEEIEIEECQLEFDNLHQIEYYMMKRESCEENKSDVLISTENIKTENFNSNEGIQERKIDIEMKKFDFPICTKAIHDFVENRQTVQTIKMYSRKKCFLSATKKWHHNFGKFNGTCLYCGQFFCDKLLFLHHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCEICSKCFKKQSNLKEHNRLHTCKKLFKCEYCSKCFTKSKCLKMHVRIHTGEKPFECEICSKCFKTSSHLKNHVKSHTGVRPFKCEICEKCFKTSHHLKRHTRTHTGDKPFRCEDCSKCFTENRSLKQHIIRDHTGEKSLKCEICLKCFTLQIDLKQHIRTHSNEKPFKCKVCSKCFTGQSKLNRHVKTHTGEKPFKCEICSKCFTDSSDLKKHIRIHTGEKPYKCEICSKCFEVSGNLKRHIKIHTGEKPYKCEICSKCFKTSTDLKKHVRTHNGDKPFRCEYCSKCFTQFGDLNIHMRIHTGEKSFKCEICSKYFTQSGYLKTHIRIHTGEKPFKCQTCSKCFTRFSDLKKHIRIHTGEKPYKCEICSKCFTQSSDLKKHTRTHTGDKPFRCEICSKCFTEKRSLKPHIIRYHSNEKAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056822;
- 90% Identity
- iTF_00056822;
- 80% Identity
- iTF_00056822;